Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Ccdc9Q8VC31 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Gm9768-201ENSMUST00000206007 2861 ntBASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Ccdc9Q8VC31 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ccdc9Q8VC31 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC19.52■□□□□ 0.72
Ccdc9Q8VC31 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc9Q8VC31 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Ccdc9Q8VC31 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Ccdc9Q8VC31 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
Ccdc9Q8VC31 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Ccdc9Q8VC31 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ccdc9Q8VC31 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms