Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.77□□□□□ -0.04
Cdh11P55288 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cdh11P55288 Gm13474-201ENSMUST00000122466 815 ntBASIC14.77□□□□□ -0.05
Cdh11P55288 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC14.77□□□□□ -0.05
Cdh11P55288 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Cdh11P55288 Gm23634-201ENSMUST00000175071 91 ntBASIC14.77□□□□□ -0.05
Cdh11P55288 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Cdh11P55288 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Cdh11P55288 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC14.77□□□□□ -0.05
Cdh11P55288 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Gm19430-201ENSMUST00000193847 2137 ntBASIC14.77□□□□□ -0.05
Cdh11P55288 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdh11P55288 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Cdh11P55288 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Cdh11P55288 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC14.75□□□□□ -0.05
Cdh11P55288 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.75□□□□□ -0.05
Cdh11P55288 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.75□□□□□ -0.05
Cdh11P55288 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Cdh11P55288 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Cdh11P55288 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Cdh11P55288 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdh11P55288 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
Cdh11P55288 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Cdh11P55288 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Cdh11P55288 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 AA414768-201ENSMUST00000121924 1257 ntBASIC14.74□□□□□ -0.05
Cdh11P55288 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC14.74□□□□□ -0.05
Cdh11P55288 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC14.74□□□□□ -0.05
Cdh11P55288 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.74□□□□□ -0.05
Cdh11P55288 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms