Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 AC009161.2-201ENST00000624626 138 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 SCARNA4-202ENST00000625402 129 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.23□□□□□ -2.05
LHX3Q9UBR4 MIR3529-201ENST00000637713 78 ntBASIC2.23□□□□□ -2.05
LHX3Q9UBR4 OR56A5-201ENST00000340110 738 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNU6-942P-201ENST00000363002 107 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNA5SP125-201ENST00000364843 120 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNU6-384P-201ENST00000364900 104 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNU6-550P-201ENST00000391057 101 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNA5SP425-201ENST00000410336 112 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 CYCSP48-201ENST00000417124 323 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 PGBD4P6-201ENST00000421501 610 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC003685.2-201ENST00000422795 395 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 TOMM20P4-201ENST00000427861 435 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC000111.3-201ENST00000433478 193 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RPL32P28-201ENST00000443577 397 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 C1DP4-201ENST00000455429 424 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RPS29P15-201ENST00000458329 171 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RPL7P43-201ENST00000478876 753 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 TRBV12-1-201ENST00000479785 344 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RNA5SP503-201ENST00000517047 117 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 MTCO2P4-201ENST00000517968 247 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC087241.2-201ENST00000535801 324 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 CR383656.8-201ENST00000549046 145 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 SUB1P2-201ENST00000556401 297 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AL391840.1-201ENST00000571144 367 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RPS15AP11-201ENST00000594193 385 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 uc_338.11-201ENST00000619132 160 ntBASIC2.22□□□□□ -2.05
LHX3Q9UBR4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
LHX3Q9UBR4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.21□□□□□ -2.05
LHX3Q9UBR4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNA5SP393-201ENST00000363423 117 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU4-48P-201ENST00000365559 182 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU2-9P-201ENST00000410194 145 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 SUMO1P4-201ENST00000429430 302 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AL139415.2-201ENST00000431968 163 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 CALM1P1-201ENST00000442082 433 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC006026.2-201ENST00000457376 180 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 DYNLL1P5-201ENST00000467158 270 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC006512.1-201ENST00000468816 291 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RN7SL429P-201ENST00000479090 223 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RN7SL489P-201ENST00000486185 223 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RN7SL327P-201ENST00000488659 223 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC104136.1-201ENST00000512969 394 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU1-86P-201ENST00000516108 154 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU1-41P-201ENST00000516161 162 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNA5SP200-201ENST00000516360 103 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU1-48P-201ENST00000516400 162 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 Y_RNA.687-201ENST00000516558 91 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RNU1-107P-201ENST00000516617 154 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 MIR5194-201ENST00000582634 120 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC008945.2-201ENST00000606056 604 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC005332.10-201ENST00000612725 619 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AC091834.1-201ENST00000614543 472 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RN7SL853P-201ENST00000617250 223 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 MIR6873-201ENST00000622788 63 ntBASIC2.21□□□□□ -2.06
LHX3Q9UBR4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.21□□□□□ -2.06
LHX3Q9UBR4 RBBP8P1-201ENST00000449447 1844 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 OR4G2P-201ENST00000328113 903 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 SNORD114-19-201ENST00000363072 75 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 RNU6-1029P-201ENST00000384109 107 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 RNU6-843P-201ENST00000384454 104 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 RAP1BP3-201ENST00000407180 549 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.2□□□□□ -2.06
LHX3Q9UBR4 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms