Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 snoU13.28-201ENST00000459235 104 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 MIR2053-201ENST00000459295 91 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 PHBP14-201ENST00000512887 367 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC068831.7-201ENST00000616954 363 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 U6.98-201ENST00000637157 84 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 U4.7-201ENST00000638126 106 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 MTND5P7-201ENST00000413558 1798 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 MTND4P27-201ENST00000450813 1354 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RPL9P7-201ENST00000330965 580 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 Y_RNA.2-201ENST00000362330 96 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RNU6-1317P-201ENST00000364582 104 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RNU6-1040P-201ENST00000383974 107 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RNU6-331P-201ENST00000384724 107 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 SNORA75.6-201ENST00000391318 127 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 USMG5P1-201ENST00000425964 177 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AL513043.1-201ENST00000439124 535 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 HIGD1AP2-201ENST00000446367 280 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 Z75741.1-201ENST00000446793 314 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AL136097.1-201ENST00000456945 913 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RPL9P9-202ENST00000466501 579 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AC008571.1-201ENST00000467232 300 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RN7SL330P-201ENST00000469709 307 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AC096576.1-201ENST00000489014 359 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AK3P2-201ENST00000507976 429 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RNU6-377P-201ENST00000515965 102 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 RNA5SP384-201ENST00000516615 116 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AP006245.1-201ENST00000522549 120 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 ELOCP31-201ENST00000540463 467 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 AC109446.1-201ENST00000566172 220 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 MIR3976-201ENST00000606807 139 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 MIR6134-201ENST00000617606 109 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 XIST_intron.1-201ENST00000619444 68 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 uc_338.22-201ENST00000622722 187 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
TDP1Q9NUW8 TNPO1P3-201ENST00000436471 2662 ntBASIC3.5□□□□□ -1.85
TDP1Q9NUW8 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 CEP170P1-201ENST00000502249 4587 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RNA5SP197-201ENST00000363357 119 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 Y_RNA.216-201ENST00000364205 93 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RNU6-283P-201ENST00000364788 107 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RNU6-933P-201ENST00000384424 107 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 MIR128-1-201ENST00000384921 82 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AL513475.1-201ENST00000406602 315 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RNA5SP38-201ENST00000410750 119 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AC096664.2-201ENST00000411843 406 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 BPY2DP-201ENST00000422208 265 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AL357552.1-201ENST00000445254 415 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AC128713.1-201ENST00000471495 306 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 RN7SL504P-201ENST00000494496 287 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 SCARNA16.2-201ENST00000516520 172 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AP004607.1-201ENST00000524456 203 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AL451007.1-201ENST00000595491 289 ntBASIC3.49□□□□□ -1.85
TDP1Q9NUW8 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TDP1Q9NUW8 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 RNU6-1115P-201ENST00000362490 106 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 RNU6-942P-201ENST00000363002 107 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 snosnR66.1-201ENST00000391095 99 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AL137792.2-201ENST00000443484 235 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC010099.1-201ENST00000455434 375 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms