Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 AC099654.14-201ENST00000638599 341 ntBASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
UPF3AQ9H1J1 AC026241.1-201ENST00000517873 2142 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 SNORA41-201ENST00000384675 132 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 RNU6-550P-201ENST00000391057 101 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 RNA5SP252-201ENST00000391131 119 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 Y_RNA.604-201ENST00000410574 102 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 HMGN2P35-201ENST00000412164 270 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 SNRPEP10-201ENST00000420249 274 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 SUMO2P6-201ENST00000505273 288 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 PRDX4P1-201ENST00000507189 574 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC104806.1-201ENST00000508720 308 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AL359273.1-201ENST00000510918 627 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 RAC1P5-201ENST00000512182 576 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 RNA5SP503-201ENST00000517047 117 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AL118558.2-201ENST00000556294 238 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC010525.2-201ENST00000590920 195 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AP000787.2-201ENST00000604432 568 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC067747.1-201ENST00000608026 250 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC034102.8-201ENST00000615146 484 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 HSPA8P4-201ENST00000511877 1920 ntBASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
UPF3AQ9H1J1 RNU6-877P-201ENST00000383868 107 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RNU6-38P-201ENST00000384085 107 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 Y_RNA.534-201ENST00000384599 112 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 SNORA1.3-201ENST00000384676 136 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 MIR514A2-201ENST00000385131 88 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 MIR514A3-201ENST00000385132 88 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RNU6-817P-201ENST00000391083 104 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RNU6-1148P-201ENST00000410992 104 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RPS12P24-201ENST00000412619 387 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 EEF1A1P40-201ENST00000412883 573 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 TAAR7P-201ENST00000436141 242 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 CBWD4P-201ENST00000445695 655 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RNU6-333P-201ENST00000459117 107 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AC087588.1-201ENST00000462203 316 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AL135752.1-201ENST00000479477 471 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RPL39P36-201ENST00000490784 156 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 RANP3-201ENST00000530970 276 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AC025281.1-201ENST00000567026 265 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AL161798.1-201ENST00000604630 131 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AC022893.3-201ENST00000607665 437 ntBASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
UPF3AQ9H1J1 CASC19-280ENST00000642102 1351 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC090740.1-201ENST00000623193 2262 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 Y_RNA.167-201ENST00000363735 109 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RNU1-91P-201ENST00000364746 163 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RNU6-190P-201ENST00000384154 102 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 Y_RNA.573-201ENST00000384763 105 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MT-TL1-201ENST00000386347 75 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 CISD1P1-201ENST00000393907 327 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RNU6-193P-201ENST00000410977 107 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC138393.2-201ENST00000414742 246 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 SRIP2-201ENST00000428470 166 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AL353572.1-201ENST00000442490 417 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MTND3P16-201ENST00000452205 344 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RPL31P58-201ENST00000469001 379 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RPS20P22-201ENST00000473700 357 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RPL21P99-201ENST00000480369 423 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MTCO2P30-201ENST00000503662 364 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 CASP1P1-201ENST00000526345 212 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AC118273.2-201ENST00000532092 465 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MIR548S-201ENST00000581352 82 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 MIR15A-201ENST00000607334 83 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 AP002826.1-201ENST00000608835 315 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 DISC2.1-201ENST00000612827 205 ntBASIC2.61□□□□□ -1.99
UPF3AQ9H1J1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms