Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR892C-201ENST00000516410 77 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 MTND4P7-201ENST00000523876 130 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC109635.3-201ENST00000529536 185 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AK6P1-201ENST00000540219 478 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 MIR4635-201ENST00000583759 79 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC104984.5-201ENST00000586878 94 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 MIR6715A-201ENST00000615929 79 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AL590808.1-201ENST00000618696 141 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 AC010889.1-201ENST00000566193 2666 ntBASIC2.56□□□□□ -2
CCDC3Q9BQI4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.56□□□□□ -2
CCDC3Q9BQI4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC3Q9BQI4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC3Q9BQI4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 SNORD62.1-201ENST00000362541 86 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 Y_RNA.450-201ENST00000384198 113 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 SNORA16.2-201ENST00000390991 127 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 AL139095.1-201ENST00000404326 391 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 RAP1BP3-201ENST00000407180 549 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 U3.37-201ENST00000408528 213 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 CYCSP33-201ENST00000414485 327 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 CALM1P1-201ENST00000442082 433 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 OSTCP8-201ENST00000445117 448 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 RPS15AP27-201ENST00000449183 343 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 BTF3P15-201ENST00000455606 336 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC011352.1-201ENST00000512300 793 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 RNU6-1178P-201ENST00000516674 107 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AP002770.2-201ENST00000543613 532 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC027176.1-201ENST00000560204 514 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC092325.1-201ENST00000566449 554 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 AC091152.3-201ENST00000604227 325 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 DISC2.1-201ENST00000612827 205 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 uc_338.34-201ENST00000617467 174 ntBASIC2.55□□□□□ -2
CCDC3Q9BQI4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CCDC3Q9BQI4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNY3P3-201ENST00000363816 102 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC3Q9BQI4 Y_RNA.554-201ENST00000384672 102 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 Y_RNA.573-201ENST00000384763 105 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 SNORD70.1-201ENST00000391007 85 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNU6-780P-201ENST00000391030 104 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 AL513477.1-202ENST00000417061 214 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 MTND1P4-201ENST00000435196 415 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 UBE2V1P8-201ENST00000437166 265 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 AL161651.1-201ENST00000440882 223 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 FGF7P6-202ENST00000451282 293 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNU7-167P-201ENST00000459160 62 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 RPL31P41-201ENST00000477967 372 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 SEM1P1-201ENST00000506694 209 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 MTND3P25-201ENST00000509243 135 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNU1-86P-201ENST00000516108 154 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 RNU1-107P-201ENST00000516617 154 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 SCARNA11.3-201ENST00000517276 130 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 RPL7P20-201ENST00000520308 745 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 YWHAEP7-203ENST00000622054 312 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 SCARNA4-202ENST00000625402 129 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC3Q9BQI4 ADAM3A-203ENST00000461344 2157 ntBASIC2.54□□□□□ -2
CCDC3Q9BQI4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC3Q9BQI4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.54□□□□□ -2
CCDC3Q9BQI4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC3Q9BQI4 SNORD3E-201ENST00000362899 217 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 RNU6-38P-201ENST00000384085 107 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 RNU6-72P-201ENST00000384285 79 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 SNORA67.4-201ENST00000384688 142 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 MIR514A2-201ENST00000385131 88 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 MIR514A3-201ENST00000385132 88 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 AL606923.1-201ENST00000406616 190 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.53□□□□□ -2
CCDC3Q9BQI4 USP9YP27-201ENST00000418455 438 ntBASIC2.53□□□□□ -2
CCDC3Q9BQI4 MTCO1P20-201ENST00000425366 358 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms