Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL033528.1-201ENST00000453780 140 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 MTCYBP1-201ENST00000454315 1119 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 TRBV12-1-201ENST00000479785 344 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS35Q96QK1 RNU1-41P-201ENST00000516161 162 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 RNU1-48P-201ENST00000516400 162 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 RNU7-193P-201ENST00000516723 65 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 RNU6-410P-201ENST00000517006 107 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS35Q96QK1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS35Q96QK1 LRRC37A5P-203ENST00000580181 585 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AC073410.2-201ENST00000603240 332 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AP001506.1-201ENST00000615444 211 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AC012640.5-201ENST00000623897 319 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 MIR219B-201ENST00000637023 88 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 AL359851.1-201ENST00000569460 4997 ntBASIC2.11□□□□□ -2.07
VPS35Q96QK1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS35Q96QK1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VPS35Q96QK1 HAUS6P2-201ENST00000433254 2404 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 FGF7P2-201ENST00000332473 296 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 RNA5SP37-201ENST00000365420 130 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 RNU6-487P-201ENST00000365430 104 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 Y_RNA.367-201ENST00000365544 101 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 RNU1-57P-201ENST00000384491 166 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 Y_RNA.576-201ENST00000384781 102 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 MIR95-201ENST00000385072 81 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 MTCYBP5-201ENST00000423752 1135 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 AL161788.1-201ENST00000441805 169 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC104058.1-201ENST00000448028 297 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 GAPDHP17-201ENST00000449858 1001 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 SNRPGP9-201ENST00000456025 225 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC010486.2-201ENST00000505572 483 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 MIR4648-201ENST00000580107 72 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AL121917.1-203ENST00000605534 577 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC098657.3-201ENST00000620434 263 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 AC091931.1-201ENST00000623488 728 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 CENPCP1-201ENST00000533085 2578 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 FARSBP1-201ENST00000435808 1778 ntBASIC2.1□□□□□ -2.07
VPS35Q96QK1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
VPS35Q96QK1 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
VPS35Q96QK1 OR4G2P-201ENST00000328113 903 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RNU6-1010P-201ENST00000362757 107 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 U8.2-201ENST00000363156 134 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RNU6-371P-201ENST00000364283 108 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 SNORD116-20-201ENST00000384529 92 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 SNORD23.1-201ENST00000408212 104 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RNA5SP270-201ENST00000411361 118 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RPL21P90-201ENST00000415692 466 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 PGBD4P6-201ENST00000421501 610 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC008267.5-201ENST00000424928 265 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 CALM2P2-201ENST00000428512 440 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RPL31P35-201ENST00000431058 377 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC000111.3-201ENST00000433478 193 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 MTCO3P5-201ENST00000433620 714 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC009238.1-201ENST00000442165 424 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 GPM6BP3-201ENST00000442797 145 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC009237.6-201ENST00000446969 424 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RNU1-86P-201ENST00000516108 154 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RNU1-107P-201ENST00000516617 154 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 SNORA48.11-201ENST00000517015 89 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC118273.2-201ENST00000532092 465 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 CYCSP26-201ENST00000534107 320 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 CR383656.8-201ENST00000549046 145 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 MIR5692A1-201ENST00000580523 69 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 MIR3945-201ENST00000581853 98 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 MIR5002-201ENST00000584713 97 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 AC098848.2-201ENST00000588023 330 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 RPL30P11-203ENST00000598995 310 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 NDUFA8P1-201ENST00000605525 367 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 AL161423.1-201ENST00000613700 262 ntBASIC2.09□□□□□ -2.07
VPS35Q96QK1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.09□□□□□ -2.07
VPS35Q96QK1 ZNF355P-201ENST00000427301 3216 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 SNORD115-7-201ENST00000365306 82 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 RNU6-297P-201ENST00000384636 107 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 SNORA64-201ENST00000384674 134 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 RNY3P10-201ENST00000384764 102 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 AL356379.1-201ENST00000414105 126 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 MTND3P17-201ENST00000416968 344 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 C1DP2-201ENST00000418167 426 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 MTND2P18-201ENST00000419962 1030 ntBASIC2.08□□□□□ -2.08
VPS35Q96QK1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms