Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC135776.4-201ENST00000624300 1904 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RNU1-105P-201ENST00000363470 161 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RNU6-727P-201ENST00000363592 107 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.179-201ENST00000363844 90 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 SNORD113.2-201ENST00000364166 89 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.286-201ENST00000364813 102 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RNU5A-5P-201ENST00000411054 116 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RPS26P42-201ENST00000413485 326 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 CYCSP48-201ENST00000417124 323 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC139712.2-201ENST00000424302 339 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RPS12P10-201ENST00000427031 377 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 Z98742.2-201ENST00000431564 187 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RPL26P26-201ENST00000480251 434 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC108022.1-201ENST00000493466 478 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 SEPT14P8-201ENST00000508026 178 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AL357075.2-201ENST00000614906 189 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC091905.2-201ENST00000623143 306 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 CR392039.5-201ENST00000623201 510 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC140Q96MF4 AC106871.1-201ENST00000568324 3102 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 MTND5P35-201ENST00000557537 1720 ntBASIC3.5□□□□□ -1.85
CCDC140Q96MF4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.462-201ENST00000384268 102 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 RNU6-21P-201ENST00000384710 107 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 MIR186-201ENST00000384988 86 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AL033519.2-201ENST00000403958 392 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC016397.1-201ENST00000412463 242 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 HSPE1P25-201ENST00000455484 251 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC073901.1-201ENST00000462471 408 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 RN7SL860P-201ENST00000473738 223 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC103975.1-201ENST00000482506 483 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC105137.1-201ENST00000484355 562 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 RPS27P26-201ENST00000494583 239 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 SNORA31.6-201ENST00000516241 130 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 RNA5SP464-201ENST00000516251 108 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AP006289.1-201ENST00000538089 277 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 MIR4474-201ENST00000579189 78 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 MIR7703-201ENST00000620784 77 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 AC018692.3-201ENST00000623929 123 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.49□□□□□ -1.85
CCDC140Q96MF4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.49□□□□□ -1.85
CCDC140Q96MF4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC073073.2-201ENST00000609827 2578 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AC079741.1-201ENST00000321498 212 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.20-201ENST00000362479 113 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RNU4-90P-201ENST00000362773 141 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RNU1-20P-201ENST00000363314 162 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RNU6-799P-201ENST00000363567 107 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 SNORA14A-201ENST00000364773 135 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.352-201ENST00000365439 102 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 MIR192-201ENST00000384915 110 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 AL512633.1-201ENST00000399931 655 ntBASIC3.48□□□□□ -1.85
CCDC140Q96MF4 RN7SKP167-201ENST00000411047 285 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms