Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VMP1Q96GC9 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNU4-21P-201ENST00000362802 126 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNU6-1287P-201ENST00000362914 107 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 U3.12-201ENST00000364498 214 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 Y_RNA.367-201ENST00000365544 101 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNU6-546P-201ENST00000383991 107 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNU6-1060P-201ENST00000384664 107 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNU2-32P-201ENST00000411193 191 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 BTF3L4P1-201ENST00000413813 468 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VMP1Q96GC9 HMGN2P38-201ENST00000423806 265 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 DNAJC19P4-201ENST00000440115 345 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 MTCO3P9-201ENST00000506989 781 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC074344.1-201ENST00000512823 224 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC104136.1-201ENST00000512969 394 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 RN7SKP24-201ENST00000515888 284 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 RNA5SP320-201ENST00000516263 124 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 CKS1BP7-201ENST00000522230 235 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 AP000763.2-201ENST00000540641 163 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 MIR4287-201ENST00000579398 78 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC073539.2-201ENST00000597113 165 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AL109918.3-201ENST00000603072 338 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AL096840.1-201ENST00000603287 93 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AL627230.6-201ENST00000611129 280 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.35□□□□□ -2.03
VMP1Q96GC9 AC002543.1-201ENST00000299783 1954 ntBASIC2.35□□□□□ -2.03
VMP1Q96GC9 ZNF702P-202ENST00000434269 1966 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC005336.3-201ENST00000623833 2679 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 Y_RNA.40-201ENST00000362645 93 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 RNU6-1097P-201ENST00000363586 107 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 RNU5E-7P-201ENST00000365290 117 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 RNU6-1274P-201ENST00000384557 107 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 RNU6-607P-201ENST00000411283 108 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 USP9YP8-201ENST00000441913 500 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 MTCYBP1-201ENST00000454315 1119 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 RPL30P12-201ENST00000474666 353 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 RPL23AP45-201ENST00000476406 468 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC079804.2-201ENST00000490376 200 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC090255.1-201ENST00000495779 349 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.34□□□□□ -2.03
VMP1Q96GC9 AP003072.2-201ENST00000527756 676 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC007621.1-201ENST00000604544 437 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC011155.2-201ENST00000623202 216 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 AC091931.1-201ENST00000623488 728 ntBASIC2.34□□□□□ -2.03
VMP1Q96GC9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.34□□□□□ -2.04
VMP1Q96GC9 RNU6-78P-201ENST00000362897 107 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 SNORA62.1-201ENST00000364287 154 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 RNU4-52P-201ENST00000384209 138 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 RNU6-45P-201ENST00000384471 107 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 RNY3P10-201ENST00000384764 102 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 MIR518A2-201ENST00000384966 87 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 AL512604.1-201ENST00000404812 257 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 MTND3P17-201ENST00000416968 344 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 RPL31P35-201ENST00000431058 377 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AL591043.1-201ENST00000432461 424 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AL513328.1-201ENST00000446460 224 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 RNA5SP269-201ENST00000459032 137 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 SNORD42A-201ENST00000459584 64 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AC006512.1-201ENST00000468816 291 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 RPL23AP49-201ENST00000492925 468 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
VMP1Q96GC9 MTCYBP40-201ENST00000509390 1135 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 AP003392.2-201ENST00000527269 208 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 LRRC34P1-201ENST00000542742 915 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 AC008749.1-201ENST00000597650 306 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 AC008993.2-201ENST00000631744 806 ntBASIC2.33□□□□□ -2.04
VMP1Q96GC9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
VMP1Q96GC9 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VMP1Q96GC9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
VMP1Q96GC9 CENPCP1-201ENST00000533085 2578 ntBASIC2.32□□□□□ -2.04
VMP1Q96GC9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.32□□□□□ -2.04
VMP1Q96GC9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
VMP1Q96GC9 MIR449A-201ENST00000362113 91 ntBASIC2.32□□□□□ -2.04
VMP1Q96GC9 RNA5SP276-201ENST00000362580 94 ntBASIC2.32□□□□□ -2.04
VMP1Q96GC9 RNU6-527P-201ENST00000363425 104 ntBASIC2.32□□□□□ -2.04
VMP1Q96GC9 RNU6-108P-201ENST00000365558 107 ntBASIC2.32□□□□□ -2.04
VMP1Q96GC9 RNU6-74P-201ENST00000384235 107 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms