Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SNORA19.3-201ENST00000516165 130 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 SNORA44.1-201ENST00000517031 108 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AC135279.1-201ENST00000543493 504 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AP001485.1-201ENST00000604799 199 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AC107308.1-201ENST00000615897 301 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 uc_338.12-201ENST00000616344 181 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 AP003476.1-201ENST00000623984 516 ntBASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC112Q8NEF3 RNU6-462P-201ENST00000362659 105 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 RNU6-439P-201ENST00000384188 106 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 MIR29C-201ENST00000385231 88 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC083875.1-201ENST00000419509 405 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC008267.5-201ENST00000424928 265 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AL117351.1-201ENST00000438864 766 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 DEFB108A-201ENST00000530110 222 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC136619.2-201ENST00000563361 631 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 BNIP3P9-201ENST00000603714 553 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC007363.1-201ENST00000604736 620 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC091895.1-201ENST00000624494 256 ntBASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
CCDC112Q8NEF3 AC092125.1-201ENST00000562568 1995 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 AC138393.1-203ENST00000327086 343 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 MIR26B-201ENST00000362251 77 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 SNORD116-12-201ENST00000384468 92 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 MIR518E-201ENST00000385252 88 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 RNU6-817P-201ENST00000391083 104 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 SNORA40.6-201ENST00000391153 128 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 FTH1P15-201ENST00000406984 280 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 RPS12P24-201ENST00000412619 387 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 TXNL1P1-201ENST00000429528 554 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 NEFMP1-201ENST00000443423 1006 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 BTF3P15-201ENST00000455606 336 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 RPS3AP22-201ENST00000488297 769 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 AC009712.1-201ENST00000564938 316 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 MIR3660-201ENST00000584845 100 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 RPL30P11-203ENST00000598995 310 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 BNIP3P27-201ENST00000599991 412 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 AC087045.1-201ENST00000605856 382 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.32□□□□□ -2.2
CCDC112Q8NEF3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 RNU5E-1-201ENST00000362477 120 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 RNU6-288P-201ENST00000363690 104 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 Y_RNA.192-201ENST00000363977 102 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 RNU6-166P-201ENST00000384371 107 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 Y_RNA.534-201ENST00000384599 112 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 RNU6-278P-201ENST00000390945 109 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 SNORA40C-201ENST00000391285 128 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC019070.1-201ENST00000415008 1024 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AL591704.2-201ENST00000421658 181 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 SNORA31.19-201ENST00000517079 126 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 MTND1P36-201ENST00000522384 936 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 CLIC4P2-201ENST00000601934 717 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC097468.3-201ENST00000607956 456 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AL355472.4-201ENST00000610233 626 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 MIR6504-201ENST00000613520 61 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 U1.36-201ENST00000620684 176 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 AC099654.8-201ENST00000637757 681 ntBASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC112Q8NEF3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 RNU5A-8P-201ENST00000364102 114 ntBASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 SNORA4.3-201ENST00000365564 137 ntBASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 SNORD116.1-201ENST00000365628 92 ntBASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 SNORD26-201ENST00000384147 75 ntBASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.3□□□□□ -2.2
CCDC112Q8NEF3 RPS6P15-201ENST00000431996 751 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms