Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNY3P10-201ENST00000384764 102 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 SNORD115.1-201ENST00000391109 76 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 Y_RNA.608-201ENST00000410647 95 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RN7SKP192-201ENST00000411291 327 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 MTND1P12-201ENST00000455231 147 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC104435.1-201ENST00000483483 166 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC090255.1-201ENST00000495779 349 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 HMGB1P35-201ENST00000503360 598 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RN7SKP24-201ENST00000515888 284 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC091544.4-201ENST00000555268 342 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC104984.5-201ENST00000586878 94 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC008749.1-201ENST00000597650 306 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RPL30P11-203ENST00000598995 310 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AP000860.1-201ENST00000605250 559 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC126118.1-201ENST00000607744 628 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 AC006338.1-201ENST00000618453 749 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 ZNF702P-202ENST00000434269 1966 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 CKAP2P1-201ENST00000555477 2049 ntBASIC2.15□□□□□ -2.06
ZNF540Q8NDQ6 U3.13-201ENST00000364804 214 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-946P-201ENST00000383878 107 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-533P-201ENST00000384144 107 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 HMGN1P14-201ENST00000412459 517 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AL158823.1-201ENST00000418441 478 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 WARS2P1-201ENST00000429678 537 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AL590365.1-201ENST00000450788 243 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC006026.2-201ENST00000457376 180 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-956P-201ENST00000458868 103 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 SNORD42A-201ENST00000459584 64 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 MTND2P33-201ENST00000506452 1031 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 ARL2BPP4-201ENST00000506854 471 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC008413.1-201ENST00000511864 177 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AF131216.2-201ENST00000512316 564 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 MTND3P5-201ENST00000512798 333 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC116347.2-201ENST00000514912 523 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC022880.1-201ENST00000534017 973 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC123904.2-201ENST00000548059 300 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC009063.1-201ENST00000563342 702 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 MIR3611-201ENST00000584484 83 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC009977.1-201ENST00000586015 570 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC112191.3-201ENST00000604371 277 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC091304.9-201ENST00000612091 226 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC130324.3-201ENST00000614165 542 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 AC069528.2-201ENST00000624849 1991 ntBASIC2.15□□□□□ -2.07
ZNF540Q8NDQ6 MIR412-201ENST00000362142 91 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.41-201ENST00000362646 102 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 MYL8P-204ENST00000431574 518 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 MTND6P13-201ENST00000443510 523 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AL137159.1-201ENST00000452808 512 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 SSXP1-201ENST00000453640 473 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 RPL23AP3-201ENST00000453844 468 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 RNU7-51P-201ENST00000516560 62 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AP004607.1-201ENST00000524456 203 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AP003181.2-201ENST00000528941 181 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AP000873.5-201ENST00000533906 236 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 MIR4528-201ENST00000577763 90 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC005771.1-201ENST00000585581 349 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 HMGN1P30-201ENST00000589286 268 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC243960.4-201ENST00000600532 288 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC021646.1-201ENST00000605469 484 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 MIR15A-201ENST00000607334 83 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 AC098614.4-201ENST00000607601 462 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.14□□□□□ -2.07
ZNF540Q8NDQ6 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms