Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PRELID2P1-201ENST00000552837 301 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC120024.3-201ENST00000603167 156 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AL078604.3-201ENST00000615580 211 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AC134878.1-201ENST00000619901 243 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 AL023881.1-201ENST00000621088 301 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 SAGE2P-201ENST00000420011 2126 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 IQCB2P-201ENST00000401788 1633 ntBASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.72□□□□□ -1.65
NPAS3Q8IXF0 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
NPAS3Q8IXF0 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
NPAS3Q8IXF0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
NPAS3Q8IXF0 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNU6-78P-201ENST00000362897 107 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNU6-873P-201ENST00000363833 107 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNY3P5-201ENST00000384127 102 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNU6-1124P-201ENST00000384169 107 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 SNORA20B-201ENST00000384220 132 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNU6-1152P-201ENST00000384576 107 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 MIR34A-201ENST00000385130 110 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RPS26P8-201ENST00000393490 348 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RPL36AP10-201ENST00000421785 322 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 AC007560.1-201ENST00000426912 237 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 AC105137.1-201ENST00000484355 562 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RN7SKP43-201ENST00000516173 320 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 RNU6-412P-201ENST00000516434 106 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 SNORA31.22-201ENST00000517204 135 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 MIR2116-201ENST00000517221 80 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 AC136628.3-201ENST00000521868 290 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 CYCSP40-201ENST00000575927 294 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 MIR3936-201ENST00000584304 110 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 MIR3653-201ENST00000625572 110 ntBASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NPAS3Q8IXF0 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 RNU6-1167P-201ENST00000363227 94 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 RNU6-527P-201ENST00000363425 104 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 Y_RNA.229-201ENST00000364347 113 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 RNA5SP366-201ENST00000365454 123 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ENSAP1-201ENST00000392855 326 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 EIF1AXP1-201ENST00000419267 435 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 YPEL5P1-201ENST00000419731 367 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 RPL23AP70-201ENST00000483361 460 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AC006199.1-201ENST00000548728 219 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ZNF192P1-203ENST00000565888 810 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AL138963.2-201ENST00000605137 226 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AC025166.1-201ENST00000612411 163 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AC131238.1-201ENST00000617135 328 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 AC107068.1-201ENST00000563286 4218 ntBASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NPAS3Q8IXF0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 U3.9-201ENST00000363823 204 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 Y_RNA.346-201ENST00000365385 112 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RNU6-440P-201ENST00000390882 105 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RPL31P2-201ENST00000413849 377 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 AL589765.3-201ENST00000446084 462 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RPS26P45-201ENST00000471748 340 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RN7SKP19-201ENST00000516016 252 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 RNU6-436P-201ENST00000516171 114 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.69□□□□□ -1.66
NPAS3Q8IXF0 AC106785.1-201ENST00000565935 262 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms