Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA38-201ENST00000363946 132 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 RNU6-384P-201ENST00000364900 104 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 OR5H15-201ENST00000383696 930 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 SNORA6-201ENST00000384033 151 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 Y_RNA.500-201ENST00000384466 111 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 RNU6-220P-201ENST00000390919 107 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 RPL30P4-201ENST00000429309 333 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC073464.1-201ENST00000429823 534 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL596276.1-201ENST00000434465 418 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC132479.1-201ENST00000449160 144 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 snoU109.2-201ENST00000459316 135 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC093534.1-201ENST00000504977 132 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 SNORA25.11-201ENST00000515935 105 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 RNA5SP281-201ENST00000516504 135 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AP004607.1-201ENST00000524456 203 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC135279.1-201ENST00000543493 504 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 MIR5007-201ENST00000583098 95 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SKA3Q8IX90 NBR2-204ENST00000587322 63 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC073539.2-201ENST00000597113 165 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC025449.1-201ENST00000603896 529 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL670379.10-201ENST00000604330 253 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL670379.9-201ENST00000605428 253 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC008536.2-201ENST00000607284 349 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC009090.3-201ENST00000616553 565 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC136475.10-201ENST00000620253 385 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 AC092656.1-203ENST00000624134 423 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 MTND5P30-201ENST00000452896 1731 ntBASIC2.02□□□□□ -2.09
SKA3Q8IX90 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.02□□□□□ -2.09
SKA3Q8IX90 MTND4P27-201ENST00000450813 1354 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SKA3Q8IX90 RNU6-486P-201ENST00000363116 107 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 Y_RNA.159-201ENST00000363674 87 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 XGY1-201ENST00000381172 446 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AL133475.1-201ENST00000404414 305 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 U3.40-201ENST00000408706 208 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 RNU4-46P-201ENST00000410818 138 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 MTATP6P18-201ENST00000417994 673 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 SRIP2-201ENST00000428470 166 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 MICF-203ENST00000432679 129 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC018634.1-201ENST00000437554 401 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC006512.1-201ENST00000468816 291 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 RPS3AP17-201ENST00000472594 777 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 HMGB1P30-201ENST00000492455 606 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC079382.1-201ENST00000493346 557 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 SMURF2P1-201ENST00000514992 481 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 RNA5SP112-201ENST00000515937 99 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 RNU1-86P-201ENST00000516108 154 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 MIR892C-201ENST00000516410 77 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 Y_RNA.687-201ENST00000516558 91 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 RNU1-107P-201ENST00000516617 154 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC078814.3-201ENST00000553036 491 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 RPS3AP23-202ENST00000574601 686 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 MTCYBP33-201ENST00000575007 1130 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 MIR4703-201ENST00000577728 79 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC105245.1-201ENST00000581934 244 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AL021997.1-201ENST00000605757 193 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SKA3Q8IX90 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 MIR203B-201ENST00000636080 86 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
SKA3Q8IX90 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
SKA3Q8IX90 ZNF680P1-201ENST00000436625 1469 ntBASIC2.01□□□□□ -2.09
SKA3Q8IX90 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2□□□□□ -2.09
SKA3Q8IX90 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
SKA3Q8IX90 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2□□□□□ -2.09
SKA3Q8IX90 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2□□□□□ -2.09
SKA3Q8IX90 RNU6-371P-201ENST00000364283 108 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 Y_RNA.296-201ENST00000364930 108 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 AL353621.1-201ENST00000418219 243 ntBASIC2□□□□□ -2.09
SKA3Q8IX90 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms