Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AL031601.2-202ENST00000622650 282 ntBASIC3.2□□□□□ -1.9
SYNE3Q6ZMZ3 AC090617.10-201ENST00000624308 134 ntBASIC3.2□□□□□ -1.9
SYNE3Q6ZMZ3 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.72-201ENST00000362894 103 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.279-201ENST00000364763 95 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-1303P-201ENST00000364841 107 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 RNU1-109P-201ENST00000383960 147 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.530-201ENST00000384587 101 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-658P-201ENST00000384606 106 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-1148P-201ENST00000410992 104 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 USP9YP20-201ENST00000419224 558 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AL121601.2-201ENST00000438019 707 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 HMGN2P10-201ENST00000448085 265 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC103975.1-201ENST00000482506 483 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 RPS29P20-201ENST00000489592 171 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 SNORA20.3-201ENST00000516880 132 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC022634.1-201ENST00000520765 532 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 MTCO3P13-201ENST00000577757 781 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 MIR4782-201ENST00000577987 79 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC138761.3-201ENST00000579993 334 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC092747.3-201ENST00000603769 301 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AL160281.1-201ENST00000605307 311 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AL359198.2-201ENST00000611836 194 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC006386.2-201ENST00000624491 75 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC012005.1-201ENST00000624575 75 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 CASC19-280ENST00000642102 1351 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC008669.1-201ENST00000565823 2178 ntBASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SYNE3Q6ZMZ3 AC138915.1-201ENST00000565427 1685 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-266P-201ENST00000364225 107 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 MT-TL1-201ENST00000386347 75 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 RNA5SP219-201ENST00000390940 113 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 EIF4E2P1-201ENST00000393781 255 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.615-201ENST00000410769 117 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 RNA5SP21-201ENST00000410917 96 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC023141.4-201ENST00000412031 328 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC105272.1-201ENST00000438604 198 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 UBBP3-201ENST00000445497 241 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC128713.1-201ENST00000471495 306 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC097462.2-201ENST00000504623 481 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-1314P-201ENST00000517139 104 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 BTF3P12-201ENST00000519620 469 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC023050.3-201ENST00000541142 333 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 EIF4BP1-201ENST00000554881 351 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 PSMA3P-201ENST00000555485 635 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 BNIP3P10-201ENST00000605360 577 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 AC087045.1-201ENST00000605856 382 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 MIR6733-201ENST00000635723 61 ntBASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.18□□□□□ -1.9
SYNE3Q6ZMZ3 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 RNU1-112P-201ENST00000364401 164 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC138393.2-201ENST00000414742 246 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AL513185.2-201ENST00000425543 193 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC007560.1-201ENST00000426912 237 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 MTATP6P23-201ENST00000440153 476 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-1038P-201ENST00000516516 104 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC011471.1-201ENST00000585766 187 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 MTND4LP5-201ENST00000605152 292 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC002044.1-201ENST00000606707 158 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 MIR7106-201ENST00000612419 65 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC004852.3-201ENST00000614131 326 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AL136221.1-201ENST00000621449 509 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 Z69720.2-201ENST00000624755 279 ntBASIC3.17□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.86-201ENST00000363020 111 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 Y_RNA.303-201ENST00000364998 94 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 RNU6-72P-201ENST00000384285 79 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 RNY3P14-201ENST00000384309 102 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AL162578.1-201ENST00000406202 378 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 RPS4XP7-201ENST00000406274 780 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 MTCO3P46-201ENST00000425787 232 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AC112220.1-201ENST00000434628 355 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 RPL39P40-201ENST00000445481 146 ntBASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.16□□□□□ -1.9
SYNE3Q6ZMZ3 AL031183.1-201ENST00000457667 207 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms