Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-583P-201ENST00000516012 92 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNA5SP476-201ENST00000516613 103 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-572P-201ENST00000516724 80 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 AL590095.2-201ENST00000604136 117 ntBASIC1.16□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-1167P-201ENST00000363227 94 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 RNA5SP62-201ENST00000363457 110 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 RNA5SP457-201ENST00000363657 124 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC244636.1-201ENST00000421152 228 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC093106.2-201ENST00000428212 385 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 MTCO2P20-201ENST00000437339 673 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 SNORD97-201ENST00000459187 142 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC023194.1-201ENST00000493084 308 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC108078.1-201ENST00000508073 725 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC104806.1-201ENST00000508720 308 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC005776.1-201ENST00000603164 290 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC021646.1-201ENST00000605469 484 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-88P-201ENST00000606801 100 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AL355472.4-201ENST00000610233 626 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AL359314.1-201ENST00000616913 261 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 AC091948.2-201ENST00000636510 279 ntBASIC1.15□□□□□ -2.23
CCDC88AQ3V6T2 FARSBP1-201ENST00000435808 1778 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 RNU5E-1-201ENST00000362477 120 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL591034.2-201ENST00000402839 359 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL079342.2-201ENST00000403367 482 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL449283.1-202ENST00000418249 604 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-678P-201ENST00000516832 109 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC010376.1-201ENST00000522101 334 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 DEFB108A-201ENST00000530110 222 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 MRPS36P5-201ENST00000551909 298 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL512605.2-201ENST00000592972 256 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AP002802.2-201ENST00000605877 235 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC006927.2-201ENST00000639256 389 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 MIR193B-201ENST00000384907 83 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL591704.2-201ENST00000421658 181 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC015922.2-201ENST00000435593 184 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC118469.1-201ENST00000442943 488 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC008834.1-201ENST00000511612 175 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AL356432.3-201ENST00000568952 465 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 PRR13P7-201ENST00000605538 430 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC068880.4-201ENST00000623082 495 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 AC138627.2-201ENST00000624202 601 ntBASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-898P-201ENST00000365627 104 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 RNU11-3P-201ENST00000391111 133 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 FABP5P15-201ENST00000453566 214 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 MEMO1P3-201ENST00000459811 302 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC010631.1-201ENST00000474150 156 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 HMGB1P36-201ENST00000487709 576 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 HMGB1P35-201ENST00000503360 598 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC114981.1-201ENST00000503897 678 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 RN7SKP256-201ENST00000517201 314 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AP003355.1-201ENST00000518956 587 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AL133153.1-201ENST00000557756 303 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 VN1R87P-201ENST00000596706 487 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC098614.4-201ENST00000607601 462 ntBASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.13□□□□□ -2.23
CCDC88AQ3V6T2 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-97P-201ENST00000363387 104 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU1-39P-201ENST00000383897 165 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 UBE2FP1-201ENST00000416536 447 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC004941.2-201ENST00000427009 228 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 MTND5P13-201ENST00000513046 1079 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNU6-334P-201ENST00000517072 102 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 RNA5SP330-201ENST00000517096 96 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AC021451.1-201ENST00000523498 1129 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 IMMP1LP2-201ENST00000552954 492 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 MIR3167-201ENST00000579623 85 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 MIR4293-201ENST00000584305 78 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.12□□□□□ -2.23
CCDC88AQ3V6T2 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms