Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-1153P-201ENST00000516760 105 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 CBX3P7-201ENST00000532876 502 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 PISRT1.1-201ENST00000616930 107 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 AC073308.1-201ENST00000623696 305 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 MIR7153-201ENST00000637758 57 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 U4.7-201ENST00000638126 106 ntBASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PTCHD3Q3KNS1 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AL356274.2-201ENST00000624379 3752 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 MTND5P10-201ENST00000603719 1809 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 KPNA2P1-201ENST00000458289 1591 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.128-201ENST00000363391 112 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RNU5E-7P-201ENST00000365290 117 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RNA5SP120-201ENST00000410900 112 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 BPY2DP-201ENST00000422208 265 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RPL31P12-201ENST00000422587 358 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC093151.1-201ENST00000427711 313 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 BX679664.1-201ENST00000434429 253 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 DAP3P1-201ENST00000441522 278 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RPL26P9-201ENST00000457466 433 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC027575.1-201ENST00000481064 460 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC093663.1-201ENST00000497190 394 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC097473.1-201ENST00000508142 408 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 TRAV32-201ENST00000553993 340 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC005476.1-201ENST00000554427 397 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AL391261.3-201ENST00000557194 520 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 VN1R107P-201ENST00000601784 209 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC024153.1-201ENST00000603103 365 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC080078.3-201ENST00000605407 463 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AL121917.1-203ENST00000605534 577 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AL627309.6-201ENST00000606857 840 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC244517.12-201ENST00000623581 663 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 MIR3651-201ENST00000630427 90 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC134503.1-201ENST00000633048 54 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AL669831.3-213ENST00000636676 183 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 AC010680.1-201ENST00000590024 3590 ntBASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTCHD3Q3KNS1 ZNF826P-207ENST00000622273 1910 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.151-201ENST00000363566 112 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.394-201ENST00000383942 103 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.395-201ENST00000383945 109 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 MIR517A-201ENST00000385001 87 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.594-201ENST00000410373 140 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC016831.2-201ENST00000417179 352 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL714022.1-201ENST00000439897 151 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 RN7SL442P-201ENST00000473804 320 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-377P-201ENST00000515965 102 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AP004607.1-201ENST00000524456 203 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL121821.2-201ENST00000556081 394 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AL080274.1-201ENST00000605565 220 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC007496.3-201ENST00000624987 3443 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 AC110491.1-201ENST00000562191 2010 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 CDC27P3-201ENST00000635418 1910 ntBASIC3.25□□□□□ -1.89
PTCHD3Q3KNS1 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RPL9P7-201ENST00000330965 580 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-525P-201ENST00000363685 104 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.197-201ENST00000364004 102 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-827P-201ENST00000365553 106 ntBASIC3.24□□□□□ -1.89
PTCHD3Q3KNS1 RNU6-310P-201ENST00000384655 107 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms