Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 UQCRHP3-201ENST00000451503 251 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 NIPA2P5-201ENST00000452282 464 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 snoU13.15-201ENST00000459407 104 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 RPS27P26-201ENST00000494583 239 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 HIGD1AP13-201ENST00000509878 289 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 SNORA25.17-201ENST00000517184 124 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 SCARNA20.6-201ENST00000517251 106 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AL133393.1-201ENST00000603277 287 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 RBM11P1-201ENST00000604951 799 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC092807.2-201ENST00000609367 243 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC093536.2-201ENST00000565257 1406 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC092435.3-201ENST00000565538 3654 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.324-201ENST00000365165 102 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.378-201ENST00000365652 113 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 U8.9-201ENST00000365667 134 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 RNU6-72P-201ENST00000384285 79 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 SNORD15B-201ENST00000384714 146 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 RNA5SP354-201ENST00000391247 136 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 SAR1AP2-201ENST00000392696 594 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 RNU4-26P-201ENST00000410270 107 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AL139415.2-201ENST00000431968 163 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC092473.1-201ENST00000441098 221 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 MTND4LP22-201ENST00000508209 276 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 SNORA14.1-201ENST00000516113 141 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 RNU6-358P-201ENST00000516564 75 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC079600.2-201ENST00000550076 130 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC005498.1-201ENST00000592125 465 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 VN1R80P-201ENST00000597126 338 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC069234.5-201ENST00000611056 416 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AL591516.1-201ENST00000611326 274 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 AC243829.7-201ENST00000633081 225 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 MIR622-201ENST00000638396 96 ntBASIC2.89□□□□□ -1.95
COL28A1Q2UY09 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL28A1Q2UY09 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.100-201ENST00000363141 102 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 RNU6-266P-201ENST00000364225 107 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 RNU6-1303P-201ENST00000364841 107 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 RNU6-898P-201ENST00000365627 104 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 SNORA46-201ENST00000384762 135 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 FGF7P8-201ENST00000402994 292 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AL645937.1-202ENST00000421799 937 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AL603825.1-201ENST00000438481 80 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 IFNA11P-201ENST00000446352 526 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 NFU1P2-201ENST00000448700 469 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 snoU13.23-201ENST00000458863 104 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.665-201ENST00000516177 98 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 RNA5SP24-201ENST00000516478 95 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC069113.1-201ENST00000517763 267 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AP004607.1-201ENST00000524456 203 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC060780.3-201ENST00000589464 80 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC092747.3-201ENST00000603769 301 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC006504.8-201ENST00000621046 635 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC064859.1-201ENST00000624741 174 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 Z69720.2-201ENST00000624755 279 ntBASIC2.88□□□□□ -1.95
COL28A1Q2UY09 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.88□□□□□ -1.95
COL28A1Q2UY09 AC010889.1-201ENST00000566193 2666 ntBASIC2.87□□□□□ -1.95
COL28A1Q2UY09 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL28A1Q2UY09 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms