Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OR5T3-201ENST00000303059 1023 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 MIR330-201ENST00000362196 94 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 RNU6-1210P-201ENST00000363775 107 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.84□□□□□ -2.28
CHD3Q12873 RNU6-468P-201ENST00000384003 109 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 MIR518A2-201ENST00000384966 87 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
CHD3Q12873 SKA2P1-201ENST00000425592 390 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 GXYLT1P1-201ENST00000446657 490 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 AP001025.1-201ENST00000486139 332 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
CHD3Q12873 UBL5P1-201ENST00000507979 193 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.84□□□□□ -2.28
CHD3Q12873 OR6C7P-201ENST00000547875 934 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 AL355802.3-201ENST00000607571 545 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 MIR8074-201ENST00000615081 81 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.84□□□□□ -2.28
CHD3Q12873 ICE2P2-201ENST00000483823 2787 ntBASIC0.84□□□□□ -2.28
CHD3Q12873 AC092447.10-201ENST00000620607 1652 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 RBBP8P1-201ENST00000449447 1844 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 RNU6-549P-201ENST00000384433 107 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
CHD3Q12873 MIR1262-201ENST00000408276 93 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
CHD3Q12873 BTF3P8-201ENST00000414577 526 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 ISCA1P1-201ENST00000426679 387 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.83□□□□□ -2.28
CHD3Q12873 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 AC013267.1-201ENST00000458227 267 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC108729.2-201ENST00000476543 840 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC026414.1-201ENST00000504046 698 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 RNU6-572P-201ENST00000516724 80 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.83□□□□□ -2.28
CHD3Q12873 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 AC005832.3-201ENST00000537929 631 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.83□□□□□ -2.28
CHD3Q12873 AC012213.3-201ENST00000577199 777 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC098614.4-201ENST00000607601 462 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC104820.1-201ENST00000624183 307 ntBASIC0.83□□□□□ -2.28
CHD3Q12873 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.83□□□□□ -2.28
CHD3Q12873 RNU6-944P-201ENST00000364023 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 SNORD14B-201ENST00000364533 90 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.82□□□□□ -2.28
CHD3Q12873 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 AL591212.2-201ENST00000433923 257 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 PTGES3P1-201ENST00000439531 483 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AL158053.1-201ENST00000441503 453 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 PRELID3BP1-201ENST00000457142 540 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-1132P-201ENST00000459214 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 AC008628.1-201ENST00000508663 265 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 RNA5SP476-201ENST00000516613 103 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-678P-201ENST00000516832 109 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 AL358072.1-201ENST00000604156 575 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AL445435.1-201ENST00000604232 665 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 AC138627.2-201ENST00000624202 601 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC092192.1-201ENST00000633154 1018 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
CHD3Q12873 Y_RNA.311-201ENST00000365068 96 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-354P-201ENST00000383862 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-701P-201ENST00000384059 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-610P-201ENST00000384264 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 MIR936-201ENST00000401264 98 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 MIR1267-201ENST00000408723 78 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 NCOR1P3-201ENST00000420479 303 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 MRPL35P3-201ENST00000421557 364 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 MTND1P28-201ENST00000435623 950 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 NEFMP1-201ENST00000443423 1006 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 GDI2P2-201ENST00000445131 608 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 RNU6-333P-201ENST00000459117 107 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 RN7SKP256-201ENST00000517201 314 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 AP001189.2-201ENST00000527320 189 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC0.82□□□□□ -2.28
CHD3Q12873 AC022202.1-201ENST00000613515 211 ntBASIC0.82□□□□□ -2.28
CHD3Q12873 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.82□□□□□ -2.28
CHD3Q12873 SNORD65.1-201ENST00000390889 71 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 UBE2V1P15-201ENST00000407776 448 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 RNU2-23P-201ENST00000410545 195 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 AC015922.2-201ENST00000435593 184 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 USP9YP22-201ENST00000438971 294 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 ARPC3P5-201ENST00000448802 534 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 HMGB1P36-201ENST00000487709 576 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 RNU6-965P-201ENST00000516721 96 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 SNORA31.17-201ENST00000516953 127 ntBASIC0.81□□□□□ -2.28
CHD3Q12873 ACA59.2-201ENST00000517061 156 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms