Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-658P-201ENST00000384606 106 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RNU6-1179P-201ENST00000384667 107 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.04□□□□□ -1.92
HDAC4P56524 RPS4XP7-201ENST00000406274 780 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 POLHP1-201ENST00000411806 470 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AL353621.1-201ENST00000418219 243 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RPL21P111-201ENST00000418453 477 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AL353729.1-201ENST00000425044 720 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AL513185.2-201ENST00000425543 193 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC007560.1-201ENST00000426912 237 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.04□□□□□ -1.92
HDAC4P56524 Z96811.1-201ENST00000445880 108 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC083904.1-201ENST00000487828 231 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 Y_RNA.654-201ENST00000497848 106 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 FAM206BP-201ENST00000510179 541 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.04□□□□□ -1.92
HDAC4P56524 RNU6-703P-201ENST00000516946 107 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RNU6-1314P-201ENST00000517139 104 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.04□□□□□ -1.92
HDAC4P56524 AC022634.1-201ENST00000520765 532 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC107953.1-201ENST00000522216 297 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.04□□□□□ -1.92
HDAC4P56524 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.04□□□□□ -1.92
HDAC4P56524 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.04□□□□□ -1.92
HDAC4P56524 VN1R80P-201ENST00000597126 338 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 U6.42-201ENST00000618440 107 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC103705.1-201ENST00000619013 241 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 AC022418.1-201ENST00000624118 445 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 U6.99-201ENST00000637524 83 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HDAC4P56524 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HDAC4P56524 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HDAC4P56524 VTRNA1-1-201ENST00000363120 99 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 SNORA5B-201ENST00000363786 132 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 RNA5SP126-201ENST00000365092 109 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 Z98749.2-208ENST00000381646 500 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 RNU6-434P-201ENST00000384376 107 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 SNORA40C-201ENST00000391285 128 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC009414.1-201ENST00000427200 443 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.03□□□□□ -1.92
HDAC4P56524 AL078601.1-201ENST00000444542 271 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 RNU7-167P-201ENST00000459160 62 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC128713.1-201ENST00000471495 306 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 RPS29P26-201ENST00000477483 171 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AP004217.1-201ENST00000480579 346 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 HMGB1P30-201ENST00000492455 606 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 RPS27AP10-201ENST00000496103 208 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 HMGN1P12-201ENST00000499125 195 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AC010486.1-201ENST00000511793 424 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.03□□□□□ -1.92
HDAC4P56524 MIR4782-201ENST00000577987 79 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 LRRC37A5P-203ENST00000580181 585 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC092747.3-201ENST00000603769 301 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 ATP1B3P1-201ENST00000605365 821 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.03□□□□□ -1.92
HDAC4P56524 AC009033.1-201ENST00000624279 431 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 ZNF519P1-201ENST00000449011 1626 ntBASIC3.03□□□□□ -1.92
HDAC4P56524 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HDAC4P56524 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HDAC4P56524 AC121333.1-201ENST00000567488 2709 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HDAC4P56524 SNORA9.2-201ENST00000365361 133 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 RNU6-166P-201ENST00000384371 107 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 RNA5SP219-201ENST00000390940 113 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AL139095.1-201ENST00000404326 391 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 RNU6-607P-201ENST00000411283 108 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 RPL35AP12-201ENST00000425362 338 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.02□□□□□ -1.93
HDAC4P56524 GSTA11P-201ENST00000452866 669 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AL583843.1-201ENST00000456070 346 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 PMCHL2-203ENST00000457791 237 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC117503.1-201ENST00000472241 394 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 RPS29P20-201ENST00000489592 171 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.02□□□□□ -1.93
HDAC4P56524 RNU6-507P-201ENST00000516045 100 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 SNORA25.17-201ENST00000517184 124 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.02□□□□□ -1.93
HDAC4P56524 NACAP3-201ENST00000552100 481 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 PSMA3P-201ENST00000555485 635 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC025281.1-201ENST00000567026 265 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.02□□□□□ -1.93
HDAC4P56524 AC005730.3-201ENST00000583067 366 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 MIR4672-201ENST00000583126 81 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC010620.2-201ENST00000600135 313 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC019159.1-201ENST00000605094 187 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC093732.2-201ENST00000607950 274 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 Z82243.1-201ENST00000609432 473 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 AC013412.1-201ENST00000610687 192 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 U2.17-201ENST00000611454 95 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HDAC4P56524 AC000403.1-201ENST00000613696 3585 ntBASIC3.02□□□□□ -1.93
HDAC4P56524 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HDAC4P56524 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms