Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC138649.3-201ENST00000622154 254 ntBASIC1.93□□□□□ -2.1
PKNOX1P55347 AC091932.3-201ENST00000624223 323 ntBASIC1.93□□□□□ -2.1
PKNOX1P55347 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.93□□□□□ -2.1
PKNOX1P55347 AC110994.2-201ENST00000635481 492 ntBASIC1.93□□□□□ -2.1
PKNOX1P55347 MIR219B-201ENST00000637023 88 ntBASIC1.93□□□□□ -2.1
PKNOX1P55347 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.93□□□□□ -2.1
PKNOX1P55347 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.93□□□□□ -2.1
PKNOX1P55347 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.93□□□□□ -2.1
PKNOX1P55347 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PKNOX1P55347 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PKNOX1P55347 FGF7P2-201ENST00000332473 296 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 SNORA16B-201ENST00000364674 135 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 SNORD115-7-201ENST00000365306 82 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 MIR95-201ENST00000385072 81 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PKNOX1P55347 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PKNOX1P55347 RNA5SP111-201ENST00000411386 101 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC008267.5-201ENST00000424928 265 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC092447.3-201ENST00000426027 686 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 MTCO3P5-201ENST00000433620 714 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AL033528.1-201ENST00000453780 140 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 CYP2C59P-201ENST00000457790 269 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 RNA5SP233-201ENST00000459153 113 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 SNORD42A-201ENST00000459584 64 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AP001025.1-201ENST00000486139 332 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 MTAPP1-201ENST00000489154 819 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 HMGB1P30-201ENST00000492455 606 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AP003072.2-201ENST00000527756 676 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 AC118273.2-201ENST00000532092 465 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.92□□□□□ -2.1
PKNOX1P55347 MIR3682-201ENST00000581338 84 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 SNRPGP19-201ENST00000603826 189 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AL670379.4-201ENST00000605279 254 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC021646.1-201ENST00000605469 484 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 NDUFA8P1-201ENST00000605525 367 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 AC093788.1-201ENST00000609356 927 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 U6.42-201ENST00000618440 107 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 MIR5739-201ENST00000619803 80 ntBASIC1.92□□□□□ -2.1
PKNOX1P55347 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PKNOX1P55347 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
PKNOX1P55347 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
PKNOX1P55347 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
PKNOX1P55347 FARSBP1-201ENST00000435808 1778 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
PKNOX1P55347 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
PKNOX1P55347 RNU6-74P-201ENST00000384235 107 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 RNU6-622P-201ENST00000384272 103 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
PKNOX1P55347 AL023284.1-201ENST00000403956 276 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 RNA5SP489-201ENST00000410986 109 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 RPL21P90-201ENST00000415692 466 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.91□□□□□ -2.1
PKNOX1P55347 RPL31P35-201ENST00000431058 377 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC104058.1-201ENST00000448028 297 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.91□□□□□ -2.1
PKNOX1P55347 snoU109.1-201ENST00000459339 135 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.91□□□□□ -2.1
PKNOX1P55347 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.91□□□□□ -2.1
PKNOX1P55347 RANP3-201ENST00000530970 276 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 CR383656.8-201ENST00000549046 145 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.91□□□□□ -2.1
PKNOX1P55347 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.91□□□□□ -2.1
PKNOX1P55347 AC073539.2-201ENST00000597113 165 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AL355297.2-201ENST00000604792 129 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC064872.1-201ENST00000604823 1072 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 Y_RNA.783-201ENST00000613546 102 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC091931.1-201ENST00000623488 728 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 MIR3529-201ENST00000637713 78 ntBASIC1.91□□□□□ -2.1
PKNOX1P55347 AC092881.1-201ENST00000638218 2733 ntBASIC1.9□□□□□ -2.1
PKNOX1P55347 ZNF355P-201ENST00000427301 3216 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
PKNOX1P55347 RNU4-82P-201ENST00000362443 140 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 RNU6-1010P-201ENST00000362757 107 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 SNORD114-19-201ENST00000363072 75 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 RNU6-1032P-201ENST00000384100 107 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 SNORA64-201ENST00000384674 134 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 RNY3P10-201ENST00000384764 102 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 AL591034.2-201ENST00000402839 359 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.9□□□□□ -2.11
PKNOX1P55347 RN7SKP32-201ENST00000410167 303 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 RNU6-387P-201ENST00000411331 105 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.9□□□□□ -2.11
PKNOX1P55347 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.9□□□□□ -2.11
PKNOX1P55347 PGBD4P6-201ENST00000421501 610 ntBASIC1.9□□□□□ -2.11
PKNOX1P55347 AL445646.1-201ENST00000431784 216 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms