Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.4□□□□□ -2.18
RPA3P35244 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
RPA3P35244 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
RPA3P35244 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
RPA3P35244 RNU6-942P-201ENST00000363002 107 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RNU6-944P-201ENST00000364023 107 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RNU6-1164P-201ENST00000364428 107 ntBASIC1.4□□□□□ -2.19
RPA3P35244 U8.10-201ENST00000384260 133 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RNU6-611P-201ENST00000384276 104 ntBASIC1.4□□□□□ -2.19
RPA3P35244 SNORA17.3-201ENST00000391159 129 ntBASIC1.4□□□□□ -2.19
RPA3P35244 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.4□□□□□ -2.19
RPA3P35244 UBE2V1P4-201ENST00000425374 344 ntBASIC1.4□□□□□ -2.19
RPA3P35244 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.4□□□□□ -2.19
RPA3P35244 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.4□□□□□ -2.19
RPA3P35244 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.4□□□□□ -2.19
RPA3P35244 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.4□□□□□ -2.19
RPA3P35244 MTND3P1-201ENST00000441336 220 ntBASIC1.4□□□□□ -2.19
RPA3P35244 SNRPGP13-201ENST00000442212 177 ntBASIC1.4□□□□□ -2.19
RPA3P35244 AC003071.1-201ENST00000451219 789 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RPS29P23-201ENST00000458635 123 ntBASIC1.4□□□□□ -2.19
RPA3P35244 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC1.4□□□□□ -2.19
RPA3P35244 AC008834.1-201ENST00000511612 175 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RNU6-965P-201ENST00000516721 96 ntBASIC1.4□□□□□ -2.19
RPA3P35244 RNU1-92P-201ENST00000517017 135 ntBASIC1.4□□□□□ -2.19
RPA3P35244 AC109329.1-201ENST00000518744 317 ntBASIC1.4□□□□□ -2.19
RPA3P35244 AC068587.4-201ENST00000533893 186 ntBASIC1.4□□□□□ -2.19
RPA3P35244 AC023050.2-201ENST00000544968 387 ntBASIC1.4□□□□□ -2.19
RPA3P35244 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.4□□□□□ -2.19
RPA3P35244 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.4□□□□□ -2.19
RPA3P35244 Y_RNA.40-201ENST00000362645 93 ntBASIC1.39□□□□□ -2.19
RPA3P35244 U8.1-201ENST00000362843 134 ntBASIC1.39□□□□□ -2.19
RPA3P35244 Y_RNA.140-201ENST00000363474 103 ntBASIC1.39□□□□□ -2.19
RPA3P35244 RNU4-13P-201ENST00000364019 141 ntBASIC1.39□□□□□ -2.19
RPA3P35244 RNU6-395P-201ENST00000365662 106 ntBASIC1.39□□□□□ -2.19
RPA3P35244 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
RPA3P35244 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
RPA3P35244 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.39□□□□□ -2.19
RPA3P35244 AL365338.1-201ENST00000422282 858 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.39□□□□□ -2.19
RPA3P35244 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.39□□□□□ -2.19
RPA3P35244 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AC104058.1-201ENST00000448028 297 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AL121594.1-201ENST00000475906 575 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.39□□□□□ -2.19
RPA3P35244 AC119751.4-201ENST00000507498 357 ntBASIC1.39□□□□□ -2.19
RPA3P35244 RNU6-1092P-201ENST00000516955 87 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.39□□□□□ -2.19
RPA3P35244 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.39□□□□□ -2.19
RPA3P35244 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.39□□□□□ -2.19
RPA3P35244 AC069431.2-201ENST00000604149 1099 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AC016925.2-201ENST00000605108 242 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AL592221.1-201ENST00000605266 382 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AL158042.1-201ENST00000605338 460 ntBASIC1.39□□□□□ -2.19
RPA3P35244 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.39□□□□□ -2.19
RPA3P35244 AL355816.2-201ENST00000610049 647 ntBASIC1.39□□□□□ -2.19
RPA3P35244 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.39□□□□□ -2.19
RPA3P35244 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.39□□□□□ -2.19
RPA3P35244 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.39□□□□□ -2.19
RPA3P35244 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 Y_RNA.46-201ENST00000362695 102 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU6-655P-201ENST00000362858 107 ntBASIC1.38□□□□□ -2.19
RPA3P35244 SNORD3E-201ENST00000362899 217 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU6-511P-201ENST00000363496 107 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU6-743P-201ENST00000364151 106 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU5E-6P-201ENST00000365574 115 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU6-946P-201ENST00000383878 107 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU6-190P-201ENST00000384154 102 ntBASIC1.38□□□□□ -2.19
RPA3P35244 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
RPA3P35244 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
RPA3P35244 AC009310.1-201ENST00000414414 451 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 AC245102.2-201ENST00000448956 180 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RPL23AP35-201ENST00000451906 501 ntBASIC1.38□□□□□ -2.19
RPA3P35244 RNU1-98P-201ENST00000458992 160 ntBASIC1.38□□□□□ -2.19
RPA3P35244 HMGB1P30-201ENST00000492455 606 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC021146.2-201ENST00000504736 556 ntBASIC1.38□□□□□ -2.19
RPA3P35244 Y_RNA.689-201ENST00000516589 107 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 AP005597.4-201ENST00000526762 229 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.38□□□□□ -2.19
RPA3P35244 AC022616.8-201ENST00000533569 253 ntBASIC1.38□□□□□ -2.19
RPA3P35244 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.38□□□□□ -2.19
RPA3P35244 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.38□□□□□ -2.19
RPA3P35244 AC068338.1-201ENST00000565567 176 ntBASIC1.38□□□□□ -2.19
RPA3P35244 MIR4769-201ENST00000584126 77 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC012065.4-201ENST00000602445 679 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AL391001.1-201ENST00000602747 715 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.38□□□□□ -2.19
RPA3P35244 AL512598.1-201ENST00000610158 273 ntBASIC1.38□□□□□ -2.19
RPA3P35244 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.38□□□□□ -2.19
RPA3P35244 AC004808.1-201ENST00000627671 721 ntBASIC1.38□□□□□ -2.19
RPA3P35244 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.38□□□□□ -2.19
RPA3P35244 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
RPA3P35244 FARSBP1-201ENST00000435808 1778 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms