Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 CYP3A137P-201ENST00000562436 69 ntBASIC0.72□□□□□ -2.29
SDC4P31431 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.72□□□□□ -2.29
SDC4P31431 AP000860.1-201ENST00000605250 559 ntBASIC0.72□□□□□ -2.29
SDC4P31431 AL020996.3-201ENST00000606617 222 ntBASIC0.72□□□□□ -2.29
SDC4P31431 AC008759.3-201ENST00000613300 508 ntBASIC0.72□□□□□ -2.29
SDC4P31431 AC099654.5-201ENST00000636479 350 ntBASIC0.72□□□□□ -2.29
SDC4P31431 FARSBP1-201ENST00000435808 1778 ntBASIC0.72□□□□□ -2.29
SDC4P31431 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.71□□□□□ -2.3
SDC4P31431 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RNU6-1010P-201ENST00000362757 107 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RNU6-23P-201ENST00000363283 107 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RNU6-968P-201ENST00000384076 107 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RNU6-1274P-201ENST00000384557 107 ntBASIC0.71□□□□□ -2.3
SDC4P31431 POLR2J4-204ENST00000418424 324 ntBASIC0.71□□□□□ -2.3
SDC4P31431 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
SDC4P31431 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.71□□□□□ -2.3
SDC4P31431 RPL30P1-201ENST00000488676 339 ntBASIC0.71□□□□□ -2.3
SDC4P31431 AC108078.1-201ENST00000508073 725 ntBASIC0.71□□□□□ -2.3
SDC4P31431 ACA64.5-201ENST00000516207 127 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RNU2-53P-201ENST00000516257 147 ntBASIC0.71□□□□□ -2.3
SDC4P31431 SCARNA16.2-201ENST00000516520 172 ntBASIC0.71□□□□□ -2.3
SDC4P31431 RN7SKP256-201ENST00000517201 314 ntBASIC0.71□□□□□ -2.3
SDC4P31431 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.71□□□□□ -2.3
SDC4P31431 DEFB108E-201ENST00000524692 240 ntBASIC0.71□□□□□ -2.3
SDC4P31431 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.71□□□□□ -2.3
SDC4P31431 AC011604.1-201ENST00000545978 196 ntBASIC0.71□□□□□ -2.3
SDC4P31431 CYP3A52P-201ENST00000563326 91 ntBASIC0.71□□□□□ -2.3
SDC4P31431 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.71□□□□□ -2.3
SDC4P31431 AC008945.2-201ENST00000606056 604 ntBASIC0.71□□□□□ -2.3
SDC4P31431 AL357080.1-201ENST00000617394 239 ntBASIC0.71□□□□□ -2.3
SDC4P31431 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.71□□□□□ -2.3
SDC4P31431 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
SDC4P31431 DDX43P2-201ENST00000604753 1354 ntBASIC0.7□□□□□ -2.3
SDC4P31431 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
SDC4P31431 RNU6-216P-201ENST00000363282 104 ntBASIC0.7□□□□□ -2.3
SDC4P31431 RNU6-529P-201ENST00000363383 104 ntBASIC0.7□□□□□ -2.3
SDC4P31431 RNU6-932P-201ENST00000391108 106 ntBASIC0.7□□□□□ -2.3
SDC4P31431 ZNF736P10Y-201ENST00000403990 1110 ntBASIC0.7□□□□□ -2.3
SDC4P31431 PIGFP2-201ENST00000421400 651 ntBASIC0.7□□□□□ -2.3
SDC4P31431 CR848007.2-201ENST00000424918 787 ntBASIC0.7□□□□□ -2.3
SDC4P31431 FTH1P12-201ENST00000432137 551 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.7□□□□□ -2.3
SDC4P31431 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.7□□□□□ -2.3
SDC4P31431 RPS29P1-201ENST00000465274 159 ntBASIC0.7□□□□□ -2.3
SDC4P31431 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.7□□□□□ -2.3
SDC4P31431 AC108729.2-201ENST00000476543 840 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.7□□□□□ -2.3
SDC4P31431 RNA5SP384-201ENST00000516615 116 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.7□□□□□ -2.3
SDC4P31431 AP001189.2-201ENST00000527320 189 ntBASIC0.7□□□□□ -2.3
SDC4P31431 MTATP6P3-201ENST00000581686 676 ntBASIC0.7□□□□□ -2.3
SDC4P31431 MIR4661-201ENST00000582720 75 ntBASIC0.7□□□□□ -2.3
SDC4P31431 MIR4452-201ENST00000583004 71 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AP002906.1-201ENST00000603405 233 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AL590095.2-201ENST00000604136 117 ntBASIC0.7□□□□□ -2.3
SDC4P31431 Z82243.1-201ENST00000609432 473 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AC004908.3-201ENST00000610248 625 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AL021879.1-201ENST00000611756 288 ntBASIC0.7□□□□□ -2.3
SDC4P31431 AC253576.2-201ENST00000618815 580 ntBASIC0.7□□□□□ -2.3
SDC4P31431 U6.99-201ENST00000637524 83 ntBASIC0.7□□□□□ -2.3
SDC4P31431 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SDC4P31431 AC008163.1-202ENST00000636004 2889 ntBASIC0.69□□□□□ -2.3
SDC4P31431 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SDC4P31431 RNU6-112P-201ENST00000363599 104 ntBASIC0.69□□□□□ -2.3
SDC4P31431 RNU6-188P-201ENST00000364207 107 ntBASIC0.69□□□□□ -2.3
SDC4P31431 Y_RNA.255-201ENST00000364581 97 ntBASIC0.69□□□□□ -2.3
SDC4P31431 RNU1-36P-201ENST00000365130 165 ntBASIC0.69□□□□□ -2.3
SDC4P31431 MIR508-201ENST00000384857 115 ntBASIC0.69□□□□□ -2.3
SDC4P31431 MIR100-201ENST00000385259 80 ntBASIC0.69□□□□□ -2.3
SDC4P31431 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.69□□□□□ -2.3
SDC4P31431 USP9YP33-201ENST00000412220 421 ntBASIC0.69□□□□□ -2.3
SDC4P31431 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.69□□□□□ -2.3
SDC4P31431 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.69□□□□□ -2.3
SDC4P31431 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.69□□□□□ -2.3
SDC4P31431 COX7BP2-201ENST00000437976 242 ntBASIC0.69□□□□□ -2.3
SDC4P31431 RPS4XP11-201ENST00000446897 772 ntBASIC0.69□□□□□ -2.3
SDC4P31431 HSPE1P13-201ENST00000451143 297 ntBASIC0.69□□□□□ -2.3
SDC4P31431 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.69□□□□□ -2.3
SDC4P31431 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC0.69□□□□□ -2.3
SDC4P31431 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.69□□□□□ -2.3
SDC4P31431 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.69□□□□□ -2.3
SDC4P31431 MIR4782-201ENST00000577987 79 ntBASIC0.69□□□□□ -2.3
SDC4P31431 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
SDC4P31431 AC005786.1-201ENST00000588553 154 ntBASIC0.69□□□□□ -2.3
SDC4P31431 AL391646.1-201ENST00000603860 190 ntBASIC0.69□□□□□ -2.3
SDC4P31431 MIR8065-201ENST00000620577 100 ntBASIC0.69□□□□□ -2.3
SDC4P31431 RNU6-97P-201ENST00000363387 104 ntBASIC0.68□□□□□ -2.3
SDC4P31431 RNU6-343P-201ENST00000364709 104 ntBASIC0.68□□□□□ -2.3
SDC4P31431 RNU6-432P-201ENST00000384196 109 ntBASIC0.68□□□□□ -2.3
SDC4P31431 RNU6-17P-201ENST00000384245 107 ntBASIC0.68□□□□□ -2.3
SDC4P31431 RNU6-18P-201ENST00000384527 107 ntBASIC0.68□□□□□ -2.3
SDC4P31431 RNU6-160P-201ENST00000384591 107 ntBASIC0.68□□□□□ -2.3
SDC4P31431 MIR186-201ENST00000384988 86 ntBASIC0.68□□□□□ -2.3
SDC4P31431 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
SDC4P31431 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.68□□□□□ -2.3
SDC4P31431 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.68□□□□□ -2.3
SDC4P31431 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.68□□□□□ -2.3
SDC4P31431 SNRPFP3-201ENST00000457792 225 ntBASIC0.68□□□□□ -2.3
SDC4P31431 MTCYBP40-201ENST00000509390 1135 ntBASIC0.68□□□□□ -2.3
SDC4P31431 FABP5P5-201ENST00000515537 406 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms