Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RSL24D1P11-201ENST00000591045 491 ntBASIC2.5□□□□□ -2.01
SIX3O95343 AC244517.12-201ENST00000623581 663 ntBASIC2.5□□□□□ -2.01
SIX3O95343 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.5□□□□□ -2.01
SIX3O95343 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.5□□□□□ -2.01
SIX3O95343 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.5□□□□□ -2.01
SIX3O95343 Z82195.2-201ENST00000612348 18351 ntBASIC2.5□□□□□ -2.01
SIX3O95343 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SIX3O95343 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.5□□□□□ -2.01
SIX3O95343 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
SIX3O95343 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
SIX3O95343 SNORD62.1-201ENST00000362541 86 ntBASIC2.49□□□□□ -2.01
SIX3O95343 U8.2-201ENST00000363156 134 ntBASIC2.49□□□□□ -2.01
SIX3O95343 Y_RNA.359-201ENST00000365498 102 ntBASIC2.49□□□□□ -2.01
SIX3O95343 MIR7-2-201ENST00000384970 110 ntBASIC2.49□□□□□ -2.01
SIX3O95343 HMGN2P35-201ENST00000412164 270 ntBASIC2.49□□□□□ -2.01
SIX3O95343 RPS3AP44-201ENST00000425466 790 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SIX3O95343 AL591806.2-201ENST00000433122 173 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.49□□□□□ -2.01
SIX3O95343 AC108938.1-201ENST00000451204 136 ntBASIC2.49□□□□□ -2.01
SIX3O95343 CYP2C59P-201ENST00000457790 269 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AC018437.1-201ENST00000492214 406 ntBASIC2.49□□□□□ -2.01
SIX3O95343 RPL23AP49-201ENST00000492925 468 ntBASIC2.49□□□□□ -2.01
SIX3O95343 RPS27P27-201ENST00000498779 255 ntBASIC2.49□□□□□ -2.01
SIX3O95343 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.49□□□□□ -2.01
SIX3O95343 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.49□□□□□ -2.01
SIX3O95343 PSMA3P-201ENST00000555485 635 ntBASIC2.49□□□□□ -2.01
SIX3O95343 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
SIX3O95343 MIR3611-201ENST00000584484 83 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.49□□□□□ -2.01
SIX3O95343 AC073410.2-201ENST00000603240 332 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AL355297.2-201ENST00000604792 129 ntBASIC2.49□□□□□ -2.01
SIX3O95343 AC021646.1-201ENST00000605469 484 ntBASIC2.49□□□□□ -2.01
SIX3O95343 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
SIX3O95343 AC010378.1-201ENST00000619270 362 ntBASIC2.49□□□□□ -2.01
SIX3O95343 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SIX3O95343 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.49□□□□□ -2.01
SIX3O95343 AC006020.1-201ENST00000420179 1854 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RNU6-1120P-201ENST00000362988 108 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RNU1-91P-201ENST00000364746 163 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RNU6-715P-201ENST00000365204 103 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RNU5E-7P-201ENST00000365290 117 ntBASIC2.48□□□□□ -2.01
SIX3O95343 Y_RNA.338-201ENST00000365320 114 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RNA5SP240-201ENST00000365355 128 ntBASIC2.48□□□□□ -2.01
SIX3O95343 Y_RNA.355-201ENST00000365462 98 ntBASIC2.48□□□□□ -2.01
SIX3O95343 XGY1-201ENST00000381172 446 ntBASIC2.48□□□□□ -2.01
SIX3O95343 DEFA7P-201ENST00000382676 285 ntBASIC2.48□□□□□ -2.01
SIX3O95343 RPS4XP7-201ENST00000406274 780 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AL031779.1-201ENST00000415663 330 ntBASIC2.48□□□□□ -2.01
SIX3O95343 MTATP6P18-201ENST00000417994 673 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.48□□□□□ -2.01
SIX3O95343 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.48□□□□□ -2.01
SIX3O95343 MTCO2P11-201ENST00000431069 680 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AC132479.1-201ENST00000449160 144 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AL139109.1-201ENST00000455491 297 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AP000852.1-201ENST00000472460 573 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 AC008413.1-201ENST00000511864 177 ntBASIC2.48□□□□□ -2.01
SIX3O95343 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SIX3O95343 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 AC079598.5-201ENST00000547460 117 ntBASIC2.48□□□□□ -2.01
SIX3O95343 BNIP3P6-201ENST00000549284 499 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AL133241.1-201ENST00000556832 487 ntBASIC2.48□□□□□ -2.01
SIX3O95343 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 MIR4703-201ENST00000577728 79 ntBASIC2.48□□□□□ -2.01
SIX3O95343 MIR5092-201ENST00000583139 88 ntBASIC2.48□□□□□ -2.01
SIX3O95343 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.48□□□□□ -2.01
SIX3O95343 AL670379.2-201ENST00000604983 252 ntBASIC2.48□□□□□ -2.01
SIX3O95343 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.48□□□□□ -2.01
SIX3O95343 AC064859.1-201ENST00000624741 174 ntBASIC2.48□□□□□ -2.01
SIX3O95343 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.48□□□□□ -2.01
SIX3O95343 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SIX3O95343 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.48□□□□□ -2.01
SIX3O95343 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SIX3O95343 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.47□□□□□ -2.01
SIX3O95343 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SIX3O95343 RNU6-527P-201ENST00000363425 104 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU6-384P-201ENST00000364900 104 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU5A-6P-201ENST00000384136 116 ntBASIC2.47□□□□□ -2.01
SIX3O95343 SNORA75-201ENST00000384158 137 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU6-606P-201ENST00000384721 111 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RN7SKP158-201ENST00000410453 326 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU2-52P-201ENST00000410680 190 ntBASIC2.47□□□□□ -2.01
SIX3O95343 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.47□□□□□ -2.01
SIX3O95343 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.47□□□□□ -2.01
SIX3O95343 AC002486.1-201ENST00000435098 391 ntBASIC2.47□□□□□ -2.01
SIX3O95343 SNORD109B-201ENST00000458961 67 ntBASIC2.47□□□□□ -2.01
SIX3O95343 SNORD109A-201ENST00000459128 67 ntBASIC2.47□□□□□ -2.01
SIX3O95343 AC090515.1-201ENST00000465295 476 ntBASIC2.47□□□□□ -2.01
SIX3O95343 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.47□□□□□ -2.01
SIX3O95343 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.47□□□□□ -2.01
SIX3O95343 RNU1-86P-201ENST00000516108 154 ntBASIC2.47□□□□□ -2.01
SIX3O95343 RNU1-107P-201ENST00000516617 154 ntBASIC2.47□□□□□ -2.01
SIX3O95343 AP001893.2-201ENST00000526949 202 ntBASIC2.47□□□□□ -2.01
SIX3O95343 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.47□□□□□ -2.01
SIX3O95343 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.47□□□□□ -2.01
SIX3O95343 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms