Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-25P-201ENST00000383873 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-1-201ENST00000383898 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-48P-201ENST00000384161 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-36P-201ENST00000384172 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-4P-201ENST00000384205 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-5P-201ENST00000384238 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-3P-201ENST00000384314 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-16P-201ENST00000384385 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-15P-201ENST00000384534 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-2-201ENST00000384627 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-29P-201ENST00000384637 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 Y_RNA.554-201ENST00000384672 102 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-9-201ENST00000384776 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-33P-201ENST00000384793 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-1068P-201ENST00000410958 103 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RN7SKP58-201ENST00000411010 305 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 OR9R1P-201ENST00000412200 877 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC11O43248 AC138623.1-201ENST00000418060 216 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC11O43248 MTND3P16-201ENST00000452205 344 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 DYNLL1P5-201ENST00000467158 270 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RPL23AP49-201ENST00000492925 468 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 CCDC34P1-201ENST00000507441 517 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-189P-201ENST00000516120 101 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 CENPUP1-201ENST00000526649 1202 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC11O43248 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC11O43248 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC11O43248 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 RNU6-6P-201ENST00000606623 107 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.99□□□□□ -1.93
HOXC11O43248 AC122108.2-201ENST00000611946 526 ntBASIC2.99□□□□□ -1.93
HOXC11O43248 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC11O43248 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXC11O43248 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
HOXC11O43248 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
HOXC11O43248 AC080128.1-201ENST00000474389 1917 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 RNU6-486P-201ENST00000363116 107 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 RNY4P14-201ENST00000363656 96 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 SET-203ENST00000372688 801 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC11O43248 RNU6-38P-201ENST00000384085 107 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 SNORA18.3-201ENST00000384122 132 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AL133475.1-201ENST00000404414 305 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AC092427.1-202ENST00000430569 476 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC11O43248 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC11O43248 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC11O43248 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXC11O43248 RNU6-333P-201ENST00000459117 107 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 RPL23AP94-201ENST00000512518 302 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 RNA5SP76-201ENST00000516277 87 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXC11O43248 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC11O43248 MTND1P35-201ENST00000526739 508 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 CYCSP27-201ENST00000527643 293 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC11O43248 OR11H5P-201ENST00000554039 926 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXC11O43248 AL138976.2-201ENST00000563989 694 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 MIR3162-201ENST00000581818 82 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 MIR3199-1-201ENST00000582434 88 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AC080078.2-201ENST00000603766 501 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 ATP1B3P1-201ENST00000605365 821 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 AC069234.5-201ENST00000611056 416 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 RMST_7.1-201ENST00000621935 268 ntBASIC2.98□□□□□ -1.93
HOXC11O43248 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXC11O43248 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXC11O43248 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC11O43248 OR4G1P-203ENST00000641984 1631 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC11O43248 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC11O43248 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-78P-201ENST00000362897 107 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-527P-201ENST00000363425 104 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-1090P-201ENST00000364065 94 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-843P-201ENST00000384454 104 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 MIR218-1-201ENST00000384999 110 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 POLHP1-201ENST00000411806 470 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 FCF1P9-201ENST00000412546 282 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXC11O43248 RPLP0P7-201ENST00000416050 667 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AL096701.2-201ENST00000416920 238 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC11O43248 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC11O43248 BX276092.3-201ENST00000424182 230 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC11O43248 MICF-203ENST00000432679 129 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC11O43248 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC11O43248 AC112771.1-201ENST00000463581 102 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXC11O43248 RPL38P4-201ENST00000502376 214 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 TBCAP3-201ENST00000512475 312 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-377P-201ENST00000515965 102 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RN7SKP132-201ENST00000516001 208 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 RNU6-1038P-201ENST00000516516 104 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 SCARNA3-201ENST00000517097 143 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms