Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SNORA70B-201ENST00000384210 135 ntBASIC1.73□□□□□ -2.13
LSM1O15116 RNA5SP465-201ENST00000391195 109 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AL079342.1-201ENST00000401460 267 ntBASIC1.73□□□□□ -2.13
LSM1O15116 CBX3P9-201ENST00000402326 552 ntBASIC1.73□□□□□ -2.13
LSM1O15116 VN1R36P-201ENST00000414936 291 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC138623.1-201ENST00000418060 216 ntBASIC1.73□□□□□ -2.13
LSM1O15116 EIF4EP2-201ENST00000422816 654 ntBASIC1.73□□□□□ -2.13
LSM1O15116 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.73□□□□□ -2.13
LSM1O15116 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.73□□□□□ -2.13
LSM1O15116 AC003989.2-201ENST00000440224 169 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.73□□□□□ -2.13
LSM1O15116 snoU109.2-201ENST00000459316 135 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC027575.1-201ENST00000481064 460 ntBASIC1.73□□□□□ -2.13
LSM1O15116 RPS29P11-201ENST00000496507 171 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC117532.1-201ENST00000514638 323 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AP003392.2-201ENST00000527269 208 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.73□□□□□ -2.13
LSM1O15116 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.73□□□□□ -2.13
LSM1O15116 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.73□□□□□ -2.13
LSM1O15116 AC007375.1-201ENST00000554513 578 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.73□□□□□ -2.13
LSM1O15116 AC103810.8-201ENST00000607347 118 ntBASIC1.73□□□□□ -2.13
LSM1O15116 Z82243.1-201ENST00000609432 473 ntBASIC1.73□□□□□ -2.13
LSM1O15116 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.73□□□□□ -2.13
LSM1O15116 AC093648.1-201ENST00000623546 606 ntBASIC1.73□□□□□ -2.13
LSM1O15116 AC110994.2-201ENST00000635481 492 ntBASIC1.73□□□□□ -2.13
LSM1O15116 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LSM1O15116 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LSM1O15116 AC073343.1-201ENST00000328239 651 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RNU6-655P-201ENST00000362858 107 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RNU6-1210P-201ENST00000363775 107 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RNA5SP212-201ENST00000391223 107 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RNA5SP390-201ENST00000410191 113 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RNU2-32P-201ENST00000411193 191 ntBASIC1.72□□□□□ -2.13
LSM1O15116 RPS15AP12-201ENST00000419498 388 ntBASIC1.72□□□□□ -2.13
LSM1O15116 USP9YP15-201ENST00000442391 422 ntBASIC1.72□□□□□ -2.13
LSM1O15116 PRELID3BP1-201ENST00000457142 540 ntBASIC1.72□□□□□ -2.13
LSM1O15116 MTCO2P29-201ENST00000465212 189 ntBASIC1.72□□□□□ -2.13
LSM1O15116 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC1.72□□□□□ -2.13
LSM1O15116 AC112204.1-201ENST00000502591 103 ntBASIC1.72□□□□□ -2.13
LSM1O15116 ANXA2P1-201ENST00000505539 926 ntBASIC1.72□□□□□ -2.13
LSM1O15116 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.72□□□□□ -2.13
LSM1O15116 SEPT7P9-203ENST00000604116 343 ntBASIC1.72□□□□□ -2.13
LSM1O15116 AC012409.4-201ENST00000612923 249 ntBASIC1.72□□□□□ -2.13
LSM1O15116 AL159153.1-201ENST00000619688 317 ntBASIC1.72□□□□□ -2.13
LSM1O15116 SCARNA4-202ENST00000625402 129 ntBASIC1.72□□□□□ -2.13
LSM1O15116 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.71□□□□□ -2.13
LSM1O15116 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.71□□□□□ -2.14
LSM1O15116 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.71□□□□□ -2.14
LSM1O15116 SNORD56.2-201ENST00000363242 71 ntBASIC1.71□□□□□ -2.14
LSM1O15116 RNU6-944P-201ENST00000364023 107 ntBASIC1.71□□□□□ -2.14
LSM1O15116 RNU6-1164P-201ENST00000364428 107 ntBASIC1.71□□□□□ -2.14
LSM1O15116 MIR578-201ENST00000384828 96 ntBASIC1.71□□□□□ -2.14
LSM1O15116 MIR10A-201ENST00000385043 110 ntBASIC1.71□□□□□ -2.14
LSM1O15116 RN7SKP284-201ENST00000411002 343 ntBASIC1.71□□□□□ -2.14
LSM1O15116 OR9R1P-201ENST00000412200 877 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.71□□□□□ -2.14
LSM1O15116 BX510359.4-201ENST00000423750 193 ntBASIC1.71□□□□□ -2.14
LSM1O15116 HMGN2P3-201ENST00000433603 273 ntBASIC1.71□□□□□ -2.14
LSM1O15116 HMGN2P5-201ENST00000436882 273 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.71□□□□□ -2.14
LSM1O15116 RPL22P17-201ENST00000438729 315 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.71□□□□□ -2.14
LSM1O15116 DUXAP8-207ENST00000456786 622 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AC034244.1-201ENST00000507687 207 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.71□□□□□ -2.14
LSM1O15116 RNA5SP182-201ENST00000516064 82 ntBASIC1.71□□□□□ -2.14
LSM1O15116 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.71□□□□□ -2.14
LSM1O15116 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.71□□□□□ -2.14
LSM1O15116 AC022616.8-201ENST00000533569 253 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.71□□□□□ -2.14
LSM1O15116 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.71□□□□□ -2.14
LSM1O15116 BNIP3P25-201ENST00000596023 559 ntBASIC1.71□□□□□ -2.14
LSM1O15116 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.71□□□□□ -2.14
LSM1O15116 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.71□□□□□ -2.14
LSM1O15116 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
LSM1O15116 AC106754.1-201ENST00000562632 1513 ntBASIC1.71□□□□□ -2.14
LSM1O15116 RNU6-546P-201ENST00000383991 107 ntBASIC1.7□□□□□ -2.14
LSM1O15116 SNORD116-20-201ENST00000384529 92 ntBASIC1.7□□□□□ -2.14
LSM1O15116 MIR9-3-201ENST00000385084 90 ntBASIC1.7□□□□□ -2.14
LSM1O15116 MIR1294-201ENST00000408503 142 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AC009310.1-201ENST00000414414 451 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AC074117.2-201ENST00000417130 397 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC1.7□□□□□ -2.14
LSM1O15116 AL360271.2-201ENST00000447710 161 ntBASIC1.7□□□□□ -2.14
LSM1O15116 TRBV12-1-201ENST00000479785 344 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 Y_RNA.687-201ENST00000516558 91 ntBASIC1.7□□□□□ -2.14
LSM1O15116 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.7□□□□□ -2.14
LSM1O15116 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 AC110588.1-201ENST00000559699 137 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 MIR3618-201ENST00000580330 88 ntBASIC1.7□□□□□ -2.14
LSM1O15116 MIR4285-201ENST00000581001 85 ntBASIC1.7□□□□□ -2.14
LSM1O15116 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.7□□□□□ -2.14
LSM1O15116 MIR4713-201ENST00000582691 75 ntBASIC1.7□□□□□ -2.14
LSM1O15116 MIR548AC-201ENST00000585049 88 ntBASIC1.7□□□□□ -2.14
LSM1O15116 OR4G3P-201ENST00000633500 913 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms