Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AL158209.2-201ENST00000619266 216 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 AC068792.1-201ENST00000621354 417 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR7157-201ENST00000635801 60 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 MIR6863-201ENST00000636112 90 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
CPSF3Q9UKF6 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 MTND4P27-201ENST00000450813 1354 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RNU4-82P-201ENST00000362443 140 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RNU6-384P-201ENST00000364900 104 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.409-201ENST00000383990 98 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RNU4-46P-201ENST00000410818 138 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 UBE2V1P10-201ENST00000414685 269 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 MTCYBP8-201ENST00000422855 651 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AL669831.1-202ENST00000428504 417 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 GTF2IP13-201ENST00000438487 386 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 NDUFB1P2-201ENST00000449477 176 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 EEF1B2P7-201ENST00000451177 676 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 BTF3P15-201ENST00000455606 336 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RNU7-63P-201ENST00000459054 62 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 GMFBP1-201ENST00000467831 427 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RPL23AP45-201ENST00000476406 468 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC091435.1-201ENST00000505442 584 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC105417.1-201ENST00000514691 285 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC022880.1-201ENST00000534017 973 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC135279.1-201ENST00000543493 504 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AP001596.2-201ENST00000608410 312 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC087241.4-201ENST00000612441 480 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 HULC.1-201ENST00000612720 240 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC015540.1-201ENST00000615828 501 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 uc_338.11-201ENST00000619132 160 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC010378.1-201ENST00000619270 362 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC124864.2-201ENST00000624736 186 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 CTSLP2-204ENST00000629029 392 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 FO624990.1-201ENST00000636373 85 ntBASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.67□□□□□ -1.98
CPSF3Q9UKF6 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC080128.1-201ENST00000474389 1917 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 RNU6-552P-201ENST00000362869 119 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 RNU6-715P-201ENST00000365204 103 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 XGY1-201ENST00000381172 446 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1072P-201ENST00000384703 107 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 RNU6-443P-201ENST00000384780 107 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 CALM2P3-201ENST00000400429 449 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 RNU6-1328P-201ENST00000410938 106 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AL627311.1-201ENST00000431514 115 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AL606489.2-201ENST00000433886 234 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 MTND3P25-201ENST00000509243 135 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 Y_RNA.655-201ENST00000515919 96 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 SNORA31.6-201ENST00000516241 130 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 SNORA31.15-201ENST00000516771 132 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC245505.1-201ENST00000556398 224 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC092325.1-201ENST00000566449 554 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC012507.3-201ENST00000603556 477 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AP001330.5-201ENST00000607176 411 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 U6.42-201ENST00000618440 107 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC139792.3-201ENST00000623525 224 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC016717.2-201ENST00000609089 5141 ntBASIC2.66□□□□□ -1.98
CPSF3Q9UKF6 AC006020.1-201ENST00000420179 1854 ntBASIC2.65□□□□□ -1.98
CPSF3Q9UKF6 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 MIR10A-201ENST00000385043 110 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 RNU6-903P-201ENST00000391270 109 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 MTCO3P40-201ENST00000392516 676 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 RNU2-29P-201ENST00000410423 189 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AL353621.1-201ENST00000418219 243 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC073415.1-201ENST00000449240 153 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 FDX1P2-201ENST00000450769 375 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AP000705.1-201ENST00000454567 350 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC027673.1-201ENST00000456245 405 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC116655.1-201ENST00000508324 901 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1178P-201ENST00000516674 107 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AP003034.1-201ENST00000534621 422 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 MIR4446-201ENST00000578505 67 ntBASIC2.65□□□□□ -1.99
CPSF3Q9UKF6 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 268.3 ms