Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC010975.2-201ENST00000427781 588 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 USP9YP14-201ENST00000430663 563 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 HMGB1P31-201ENST00000437242 427 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 RPL7P12-201ENST00000446719 750 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 AL122001.1-201ENST00000457027 370 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 SNORD109B-201ENST00000458961 67 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 SNORD109A-201ENST00000459128 67 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 MTCO3P9-201ENST00000506989 781 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC098799.2-201ENST00000509466 868 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 SNORA9.3-201ENST00000516383 129 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 SNORA43.2-201ENST00000516652 128 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 MIR3605-201ENST00000583214 100 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC004223.2-201ENST00000590309 544 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC021646.1-201ENST00000605469 484 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC073534.2-201ENST00000620377 381 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC022418.1-201ENST00000624118 445 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS28Q9UK41 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VPS28Q9UK41 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 OR56A5-201ENST00000340110 738 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 RNU4-24P-201ENST00000364565 139 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 RNU6-1072P-201ENST00000384703 107 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 RNU6-443P-201ENST00000384780 107 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 SNORD70.1-201ENST00000391007 85 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 RNA5SP184-201ENST00000411071 108 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 RPS3AP44-201ENST00000425466 790 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 AC027673.1-201ENST00000456245 405 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 SCARNA18-201ENST00000459004 134 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 AP003034.1-201ENST00000534621 422 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 BNIP3P6-201ENST00000549284 499 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 AC136619.2-201ENST00000563361 631 ntBASIC2.78□□□□□ -1.96
VPS28Q9UK41 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS28Q9UK41 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC062016.1-201ENST00000355719 319 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 SNORD114-19-201ENST00000363072 75 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 Y_RNA.194-201ENST00000363985 102 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 Y_RNA.324-201ENST00000365165 102 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 RNU5E-7P-201ENST00000365290 117 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 Y_RNA.480-201ENST00000384364 102 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 BTF3P7-201ENST00000407097 488 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 RNU2-52P-201ENST00000410680 190 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 OR9R1P-201ENST00000412200 877 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 UBE2V1P10-201ENST00000414685 269 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC138623.1-201ENST00000418060 216 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL353193.1-201ENST00000421444 268 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 ARL5AP4-201ENST00000430731 512 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 AIG1P1-201ENST00000503376 148 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC079140.5-201ENST00000507882 310 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 MTCO3P7-201ENST00000510008 774 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL137161.1-201ENST00000532231 390 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 MIR3670-2-201ENST00000582974 65 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 MIR3670-1-201ENST00000584160 65 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 MIR3670-3-201ENST00000584855 65 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC005046.1-201ENST00000608515 625 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC093788.1-201ENST00000609356 927 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC004908.3-201ENST00000610248 625 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AL359198.2-201ENST00000611836 194 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 MIR3670-4-201ENST00000612260 65 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 HMGB1P24-202ENST00000615653 685 ntBASIC2.77□□□□□ -1.97
VPS28Q9UK41 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS28Q9UK41 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS28Q9UK41 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS28Q9UK41 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS28Q9UK41 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS28Q9UK41 RNU6-859P-201ENST00000362728 107 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 RNU6-1158P-201ENST00000391167 107 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 RPS4XP7-201ENST00000406274 780 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 MTCYBP8-201ENST00000422855 651 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC112220.1-201ENST00000434628 355 ntBASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS28Q9UK41 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms