Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RAC1P2-201ENST00000511164 579 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 AC130454.1-201ENST00000622948 401 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 ZNF962P-201ENST00000443465 3140 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RNU1-76P-201ENST00000362903 159 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.222-201ENST00000364264 102 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 MIR607-201ENST00000385241 96 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RNA5SP494-201ENST00000410653 129 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 SNORA71B-202ENST00000439232 272 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC079354.2-201ENST00000453523 154 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RPS29P27-201ENST00000463711 170 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC010469.1-201ENST00000463864 576 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RPL31P13-201ENST00000484151 370 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC023141.12-201ENST00000512399 199 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RNU6-897P-201ENST00000517135 105 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 HSPE1P20-201ENST00000538133 289 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC069240.1-201ENST00000548774 375 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 HMGB1P14-201ENST00000557424 591 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AMZ2P1-203ENST00000565833 850 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 MIR4782-201ENST00000577987 79 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 MIR4513-201ENST00000581077 86 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 MIR8058-201ENST00000615737 89 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC087190.4-201ENST00000574616 8334 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 AC010615.1-201ENST00000594254 1764 ntBASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
CCDC87Q9NVE4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.78□□□□□ -1.65
CCDC87Q9NVE4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.19-201ENST00000362462 99 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 RNU6-428P-201ENST00000362942 107 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 U3.6-201ENST00000363622 211 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 U3.13-201ENST00000364804 214 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.376-201ENST00000365638 108 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.471-201ENST00000384312 102 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 MIR128-1-201ENST00000384921 82 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AC069285.2-201ENST00000440210 275 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 RN7SL807P-201ENST00000470923 297 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AL049873.1-201ENST00000480540 376 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AC025554.1-201ENST00000505641 188 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 RNU6-1282P-201ENST00000516735 96 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AC090517.1-201ENST00000569307 266 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AC104581.2-201ENST00000572227 430 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 U6.99-201ENST00000637524 83 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 MFSD8-236ENST00000641509 4050 ntBASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC87Q9NVE4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC022336.2-201ENST00000568966 2538 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 RNU1-108P-201ENST00000362556 161 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 SNORD9-201ENST00000362566 104 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 Y_RNA.183-201ENST00000363882 113 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 RNU6-72P-201ENST00000384285 79 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 RPL30P5-201ENST00000494923 336 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 PPBPP1-201ENST00000510807 373 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC107222.1-201ENST00000510899 637 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC010265.1-201ENST00000513509 211 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 RNU6-703P-201ENST00000516946 107 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC015813.4-201ENST00000610469 179 ntBASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC87Q9NVE4 AC068254.2-201ENST00000623938 3577 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms