Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-550P-201ENST00000391057 101 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 Z92545.1-201ENST00000411782 234 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 RPS12P24-201ENST00000412619 387 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AL109913.1-201ENST00000421173 514 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AL592045.1-201ENST00000429867 352 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AL591212.2-201ENST00000433923 257 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AL513328.1-201ENST00000446460 224 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AL163973.1-201ENST00000484753 577 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.66□□□□□ -1.98
USP28Q96RU2 EIF4EP3-201ENST00000498782 656 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC234781.5-201ENST00000508429 271 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC008716.1-201ENST00000511084 513 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 MRPS36P2-201ENST00000512569 299 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AC109329.2-201ENST00000519658 482 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 RPL7P20-201ENST00000520308 745 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 COX6CP5-201ENST00000527162 228 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC021269.2-201ENST00000532318 330 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AL161798.1-201ENST00000604630 131 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 MIR15A-201ENST00000607334 83 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AP001486.3-201ENST00000615334 372 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC002553.4-201ENST00000616896 331 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.66□□□□□ -1.98
USP28Q96RU2 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.66□□□□□ -1.98
USP28Q96RU2 MTND1P37-201ENST00000636562 264 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 MIR3662-201ENST00000637030 95 ntBASIC2.66□□□□□ -1.98
USP28Q96RU2 AL137003.2-201ENST00000606924 2538 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AL139276.1-201ENST00000311910 1001 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-1167P-201ENST00000363227 94 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-461P-201ENST00000364195 107 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 SNORD114-30-201ENST00000364448 72 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-741P-201ENST00000383889 107 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-116P-201ENST00000384042 109 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-817P-201ENST00000391083 104 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU2-33P-201ENST00000410344 192 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.65□□□□□ -1.99
USP28Q96RU2 RPL23AP83-201ENST00000434984 473 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.65□□□□□ -1.99
USP28Q96RU2 WASF1P1-201ENST00000447560 1131 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 MTND1P18-201ENST00000448191 573 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RPS20P22-201ENST00000473700 357 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC116353.2-201ENST00000505332 712 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-677P-201ENST00000516914 101 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 RNU6-685P-201ENST00000517088 95 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.65□□□□□ -1.99
USP28Q96RU2 AC134698.4-201ENST00000523451 826 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.65□□□□□ -1.99
USP28Q96RU2 GLYCAM1-201ENST00000546596 285 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 TRAV28-201ENST00000557548 323 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC025281.1-201ENST00000567026 265 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC010525.2-201ENST00000590920 195 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.65□□□□□ -1.99
USP28Q96RU2 AL670379.4-201ENST00000605279 254 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.65□□□□□ -1.99
USP28Q96RU2 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
USP28Q96RU2 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.65□□□□□ -1.99
USP28Q96RU2 U6.114-201ENST00000636407 96 ntBASIC2.65□□□□□ -1.99
USP28Q96RU2 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
USP28Q96RU2 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.65□□□□□ -1.99
USP28Q96RU2 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP28Q96RU2 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP28Q96RU2 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 RNU6-1287P-201ENST00000362914 107 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 U3.12-201ENST00000364498 214 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 Y_RNA.303-201ENST00000364998 94 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 SNORA4.3-201ENST00000365564 137 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 Y_RNA.534-201ENST00000384599 112 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 RNU6-1060P-201ENST00000384664 107 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AL513475.1-201ENST00000406602 315 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 EEF1A1P40-201ENST00000412883 573 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 OR6C66P-201ENST00000414917 930 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.64□□□□□ -1.99
USP28Q96RU2 SEPT14P3-201ENST00000439401 183 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.64□□□□□ -1.99
USP28Q96RU2 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.64□□□□□ -1.99
USP28Q96RU2 AL732372.2-207ENST00000445840 183 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 SEPT14P2-201ENST00000453405 183 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 RNU7-180P-201ENST00000459240 63 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.64□□□□□ -1.99
USP28Q96RU2 CCDC34P1-201ENST00000507441 517 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 SEPT14P4-201ENST00000513445 186 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AC105417.1-201ENST00000514691 285 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 RNU6-1038P-201ENST00000516516 104 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 RNU6-914P-201ENST00000516749 109 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 SNORA31.18-201ENST00000517043 134 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.64□□□□□ -1.99
USP28Q96RU2 FO082796.1-201ENST00000523795 183 ntBASIC2.64□□□□□ -1.99
USP28Q96RU2 AP000889.2-201ENST00000532684 490 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms