Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 AK6P2-201ENST00000549020 471 ntBASIC4.93□□□□□ -1.62
TRERF1Q96PN7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 AC005046.1-201ENST00000608515 625 ntBASIC4.93□□□□□ -1.62
TRERF1Q96PN7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRERF1Q96PN7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AL079305.1-201ENST00000623159 3008 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 Y_RNA.71-201ENST00000362892 104 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RNU4-56P-201ENST00000364700 142 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RNU5A-5P-201ENST00000411054 116 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 SEPT7P4-201ENST00000437076 306 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AL353748.1-201ENST00000440753 474 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 snoU13.30-201ENST00000458951 104 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC091179.1-201ENST00000461606 579 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RPS26P28-201ENST00000470806 348 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RPS4XP22-201ENST00000480755 780 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RNA5SP73-201ENST00000516744 108 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC090281.1-201ENST00000523019 276 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 KLKP1-201ENST00000595979 403 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 Y_RNA.778-201ENST00000620203 90 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC112484.5-201ENST00000624189 228 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 MIR6715B-201ENST00000637172 77 ntBASIC4.92□□□□□ -1.62
TRERF1Q96PN7 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
TRERF1Q96PN7 AC010332.2-201ENST00000613083 1904 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 MIR372-201ENST00000362225 67 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RNU4-84P-201ENST00000364200 139 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 SNORD14B-201ENST00000364533 90 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RNU6-395P-201ENST00000365662 106 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 SNORD12B-201ENST00000410433 91 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RNU6-1025P-201ENST00000410629 104 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RNA5SP104-201ENST00000410989 118 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RPL7AP73-201ENST00000413490 353 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AL356095.1-201ENST00000417217 199 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AL358472.1-201ENST00000431295 329 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RPS15AP7-201ENST00000439294 405 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 IFNWP4-201ENST00000453148 294 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 YWHAEP4-201ENST00000505390 198 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC099522.1-202ENST00000514718 367 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC106785.1-201ENST00000565935 262 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC024614.2-201ENST00000577584 372 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC008121.1-201ENST00000603244 268 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 MIR6867-201ENST00000610636 67 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC099669.2-201ENST00000616549 437 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 U73479.1-201ENST00000618062 168 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AL353748.2-201ENST00000622148 471 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 MAPK10-253ENST00000641010 4072 ntBASIC4.91□□□□□ -1.62
TRERF1Q96PN7 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRERF1Q96PN7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TRERF1Q96PN7 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.9□□□□□ -1.62
TRERF1Q96PN7 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRERF1Q96PN7 RNU5A-1-201ENST00000362698 116 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 SNORA63.4-201ENST00000362763 126 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 Y_RNA.136-201ENST00000363444 102 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 Y_RNA.217-201ENST00000364214 105 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 Y_RNA.412-201ENST00000384001 104 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 RNU6-76P-201ENST00000384060 104 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 RNU6-843P-201ENST00000384454 104 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 Y_RNA.570-201ENST00000384750 101 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.9□□□□□ -1.63
TRERF1Q96PN7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.9□□□□□ -1.63
TRERF1Q96PN7 RAB28P5-201ENST00000427490 651 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 Y_RNA.641-201ENST00000459414 105 ntBASIC4.9□□□□□ -1.63
TRERF1Q96PN7 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.9□□□□□ -1.63
TRERF1Q96PN7 GMPSP1-201ENST00000514075 579 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms