Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 RPL9P6-201ENST00000492764 598 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 SNORA25.11-201ENST00000515935 105 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AP004607.1-201ENST00000524456 203 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 RANP3-201ENST00000530970 276 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC078814.3-201ENST00000553036 491 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 RPS3AP23-202ENST00000574601 686 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MIR4648-201ENST00000580107 72 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 MIR6840-201ENST00000611937 71 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC245884.12-201ENST00000615364 59 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC120349.3-201ENST00000624377 529 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 AC110994.2-201ENST00000635481 492 ntBASIC2.34□□□□□ -2.03
ZNF560Q96MR9 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU6-858P-201ENST00000362436 107 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU1-72P-201ENST00000362976 153 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNA5SP240-201ENST00000365355 128 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU6-843P-201ENST00000384454 104 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU6-1179P-201ENST00000384667 107 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 MIR10A-201ENST00000385043 110 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AL133475.1-201ENST00000404414 305 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU2-63P-201ENST00000410792 194 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNA5SP111-201ENST00000411386 101 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 EEF1A1P40-201ENST00000412883 573 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 MORF4L1P6-201ENST00000418771 268 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 ISCA1P6-201ENST00000427740 390 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 KLF3P2-201ENST00000465138 268 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 MTND3P7-201ENST00000474435 343 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU1-41P-201ENST00000516161 162 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU1-48P-201ENST00000516400 162 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 RNU6-410P-201ENST00000517006 107 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC060788.1-201ENST00000521318 469 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC135279.1-201ENST00000543493 504 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC012414.6-201ENST00000568241 401 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC009127.3-201ENST00000570531 403 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC137800.2-201ENST00000574375 120 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC098848.2-201ENST00000588023 330 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 Z94722.1-201ENST00000604328 474 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AP001486.3-201ENST00000615334 372 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC093648.1-201ENST00000623546 606 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC005336.3-201ENST00000623833 2679 ntBASIC2.33□□□□□ -2.04
ZNF560Q96MR9 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
ZNF560Q96MR9 AC092881.1-201ENST00000638218 2733 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 MIRLET7G-201ENST00000362280 84 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 SNORD114-19-201ENST00000363072 75 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 RNU6-487P-201ENST00000365430 104 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 RNU6-297P-201ENST00000384636 107 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 USP9YP27-201ENST00000418455 438 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 EIF4EP4-201ENST00000424916 578 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 GPR143P-201ENST00000434155 205 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AL022238.1-201ENST00000442557 355 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AL360271.2-201ENST00000447710 161 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 CYP2C59P-201ENST00000457790 269 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 snoU109.2-201ENST00000459316 135 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 HMGB1P30-201ENST00000492455 606 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AC109329.1-201ENST00000518744 317 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AP000889.2-201ENST00000532684 490 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 PSMA3P-201ENST00000555485 635 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AC136619.2-201ENST00000563361 631 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 LRRC37A5P-203ENST00000580181 585 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 MIR5692A1-201ENST00000580523 69 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AL670379.4-201ENST00000605279 254 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 AC087241.4-201ENST00000612441 480 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 SCARNA4-202ENST00000625402 129 ntBASIC2.32□□□□□ -2.04
ZNF560Q96MR9 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.32□□□□□ -2.04
ZNF560Q96MR9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RNU6-1097P-201ENST00000363586 107 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RNU6-384P-201ENST00000364900 104 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 SNORD115-7-201ENST00000365306 82 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RNU6-108P-201ENST00000365558 107 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 Y_RNA.576-201ENST00000384781 102 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 RNU6-195P-201ENST00000411352 109 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 MTCO3P5-201ENST00000433620 714 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AC124916.1-201ENST00000444020 547 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 IFNA11P-201ENST00000446352 526 ntBASIC2.31□□□□□ -2.04
ZNF560Q96MR9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms