Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 BNIP3P6-201ENST00000549284 499 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 MIR4672-201ENST00000583126 81 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 AC245008.1-201ENST00000608123 476 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 AC010338.1-201ENST00000621823 717 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 MAPK10-266ENST00000641066 6555 ntBASIC2.91□□□□□ -1.94
SKA1Q96BD8 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.9□□□□□ -1.94
SKA1Q96BD8 RNU1-35P-201ENST00000362782 153 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 Y_RNA.159-201ENST00000363674 87 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 RNU6-1119P-201ENST00000384349 108 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 DEFB108C-201ENST00000400154 252 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC074117.2-201ENST00000417130 397 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL669831.1-202ENST00000428504 417 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 GTF2IP13-201ENST00000438487 386 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 MTND2P22-201ENST00000444325 1033 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 SNRPFP3-201ENST00000457792 225 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 RPS29P26-201ENST00000477483 171 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.9□□□□□ -1.95
SKA1Q96BD8 MIR5194-201ENST00000582634 120 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 AC007684.1-201ENST00000609671 477 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 RMST_7.1-201ENST00000621935 268 ntBASIC2.9□□□□□ -1.95
SKA1Q96BD8 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
SKA1Q96BD8 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
SKA1Q96BD8 AL136360.1-201ENST00000503377 1900 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 RNU6-517P-201ENST00000384362 110 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 Y_RNA.480-201ENST00000384364 102 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 RNA5SP390-201ENST00000410191 113 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC007064.1-201ENST00000412238 351 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 CYCSP33-201ENST00000414485 327 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AL139413.1-201ENST00000421309 217 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AL118520.1-201ENST00000450770 291 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 HIGD1AP13-201ENST00000509878 289 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 SNORA31.23-201ENST00000517219 133 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 RNU1-104P-201ENST00000517280 175 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC078795.2-201ENST00000602835 1252 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC090115.4-201ENST00000609970 188 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 uc_338.15-201ENST00000615470 191 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 U4atac.1-201ENST00000618345 95 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC008121.3-201ENST00000618726 433 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC022418.1-201ENST00000624118 445 ntBASIC2.89□□□□□ -1.95
SKA1Q96BD8 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.89□□□□□ -1.95
SKA1Q96BD8 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 Y_RNA.324-201ENST00000365165 102 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 RNU6-622P-201ENST00000384272 103 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 SNORD70.1-201ENST00000391007 85 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AL445529.1-201ENST00000398713 389 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MTATP6P26-201ENST00000445926 662 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC108078.1-201ENST00000508073 725 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MTCO3P7-201ENST00000510008 774 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 RN7SKP219-201ENST00000516825 296 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MIR4319-201ENST00000577285 85 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MIR4435-1-201ENST00000582552 80 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 MIR3941-201ENST00000582572 103 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AL355297.2-201ENST00000604792 129 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC009233.1-201ENST00000616477 371 ntBASIC2.88□□□□□ -1.95
SKA1Q96BD8 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
SKA1Q96BD8 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SKA1Q96BD8 AL139276.1-201ENST00000311910 1001 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 Y_RNA.1-201ENST00000352915 104 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 Y_RNA.51-201ENST00000362725 102 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 RNU6-78P-201ENST00000362897 107 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 RNU1-52P-201ENST00000384190 164 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 RNU6-301P-201ENST00000384277 107 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 MIR196B-201ENST00000384852 84 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 RPS4XP8-201ENST00000402039 771 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 RPS4XP7-201ENST00000406274 780 ntBASIC2.87□□□□□ -1.95
SKA1Q96BD8 BTF3P7-201ENST00000407097 488 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms