Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC009268.2-201ENST00000621925 457 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 OR5T3-201ENST00000303059 1023 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.88□□□□□ -2.27
USP54Q70EL1 MIR217-201ENST00000384817 110 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 MIR506-201ENST00000384998 124 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 RPL26P27-201ENST00000414397 437 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 NCOR1P3-201ENST00000420479 303 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 MTCYBP11-201ENST00000447254 1109 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 RNA5SP121-201ENST00000516537 101 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AC109329.1-201ENST00000518744 317 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.88□□□□□ -2.27
USP54Q70EL1 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.88□□□□□ -2.27
USP54Q70EL1 OR4G3P-201ENST00000633500 913 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 ZNF680P1-201ENST00000436625 1469 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
USP54Q70EL1 Y_RNA.85-201ENST00000363014 111 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 RAC1P8-201ENST00000427086 527 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.88□□□□□ -2.27
USP54Q70EL1 ARPC3P5-201ENST00000448802 534 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AP001324.2-201ENST00000461163 319 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AC008379.1-201ENST00000463655 464 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AC103851.1-201ENST00000506833 274 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 RNU6-678P-201ENST00000516832 109 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 SNORA48.11-201ENST00000517015 89 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AC091057.3-201ENST00000602684 733 ntBASIC0.88□□□□□ -2.27
USP54Q70EL1 AC138393.1-203ENST00000327086 343 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 RNU1-58P-201ENST00000362413 163 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 RNU6-942P-201ENST00000363002 107 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 RNU6-216P-201ENST00000363282 104 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 SUGT1P1-201ENST00000379514 476 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 MTCO1P56-201ENST00000401674 224 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 AC078974.1-201ENST00000411597 223 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 CECR9-201ENST00000453421 199 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 AC026410.2-201ENST00000460281 156 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 XACT-201ENST00000468762 497 ntTSL 5 BASIC0.87□□□□□ -2.27
USP54Q70EL1 AC018868.1-201ENST00000491307 315 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 AC008628.1-201ENST00000508663 265 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 RNA5SP165-201ENST00000517142 115 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.87□□□□□ -2.27
USP54Q70EL1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.87□□□□□ -2.27
USP54Q70EL1 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.87□□□□□ -2.27
USP54Q70EL1 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.87□□□□□ -2.27
USP54Q70EL1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.87□□□□□ -2.27
USP54Q70EL1 AC005951.2-201ENST00000576282 495 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 MIR4637-201ENST00000582405 84 ntBASIC0.87□□□□□ -2.27
USP54Q70EL1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.87□□□□□ -2.27
USP54Q70EL1 SNORD1A-201ENST00000364968 72 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.86□□□□□ -2.27
USP54Q70EL1 MIR618-201ENST00000385287 98 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 AL591034.2-201ENST00000402839 359 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 MIR1197-201ENST00000408818 88 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 VN1R42P-201ENST00000424651 344 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 CST2P1-201ENST00000425770 87 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 AC092634.2-201ENST00000428146 1010 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 MTCO2P20-201ENST00000437339 673 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.86□□□□□ -2.27
USP54Q70EL1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.86□□□□□ -2.27
USP54Q70EL1 RNU6-496P-201ENST00000516145 99 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.86□□□□□ -2.27
USP54Q70EL1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC0.86□□□□□ -2.27
USP54Q70EL1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC0.86□□□□□ -2.27
USP54Q70EL1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC0.86□□□□□ -2.27
USP54Q70EL1 MRPS36P5-201ENST00000551909 298 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 AP002906.1-201ENST00000603405 233 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 AC034229.4-201ENST00000607861 441 ntBASIC0.86□□□□□ -2.27
USP54Q70EL1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
USP54Q70EL1 RNU6-338P-201ENST00000383888 105 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 MIR518D-201ENST00000385014 87 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
USP54Q70EL1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AC092628.1-201ENST00000436250 252 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 AC092427.1-201ENST00000439177 601 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AC091860.1-201ENST00000505723 432 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 CYCSP23-201ENST00000519781 313 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 AC006518.2-201ENST00000542513 940 ntBASIC0.85□□□□□ -2.27
USP54Q70EL1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.85□□□□□ -2.27
USP54Q70EL1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.85□□□□□ -2.27
USP54Q70EL1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.85□□□□□ -2.27
USP54Q70EL1 MIR424-201ENST00000362227 98 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 RNA5SP347-201ENST00000362445 119 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 SNORD114-19-201ENST00000363072 75 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 SNORA22-201ENST00000383907 134 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 SNORA22C-201ENST00000384614 134 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 Y_RNA.548-201ENST00000384656 105 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 RNU6-1300P-201ENST00000391046 108 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 RNU6-932P-201ENST00000391108 106 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 MTND1P28-201ENST00000435623 950 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.84□□□□□ -2.27
USP54Q70EL1 snoU13.8-201ENST00000458890 104 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.84□□□□□ -2.27
USP54Q70EL1 AC034114.1-201ENST00000520293 285 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms