Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 CALM1P1-201ENST00000442082 433 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 PSPHP1-201ENST00000450062 261 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 MTAPP1-201ENST00000489154 819 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 CKS1BP2-201ENST00000497342 240 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC090572.1-201ENST00000519251 160 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AP004607.1-201ENST00000524456 203 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 BNIP3P30-201ENST00000601184 574 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC009314.1-201ENST00000603871 304 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC090578.1-201ENST00000604955 591 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC096772.1-201ENST00000609146 564 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AC093788.1-201ENST00000609356 927 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AL603755.1-201ENST00000619504 163 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 MIR3529-201ENST00000637713 78 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AL359851.1-201ENST00000569460 4997 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 ANKRD20A17P-201ENST00000511745 1330 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 SNORD114-19-201ENST00000363072 75 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 RNU6-179P-201ENST00000363350 107 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 RNU6-384P-201ENST00000364900 104 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 RNU6-843P-201ENST00000384454 104 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 RNU6-1140P-201ENST00000410517 106 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 RNU6-195P-201ENST00000411352 109 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 HMGN1P14-201ENST00000412459 517 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL139413.1-201ENST00000421309 217 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC073614.1-201ENST00000438690 650 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL445567.1-201ENST00000439121 144 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL161788.1-201ENST00000441805 169 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 GPM6BP3-201ENST00000442797 145 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL360271.2-201ENST00000447710 161 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL136380.1-201ENST00000447970 162 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 CYP2C59P-201ENST00000457790 269 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC055731.1-201ENST00000474387 401 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 HMGB1P30-201ENST00000492455 606 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC116562.3-201ENST00000506136 177 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 SNORA31.25-201ENST00000517242 134 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC068587.5-201ENST00000528506 175 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL512310.1-201ENST00000548639 172 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 PSMA3P-201ENST00000555485 635 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 MIR3126-201ENST00000577443 74 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AL670379.4-201ENST00000605279 254 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC021646.1-201ENST00000605469 484 ntBASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC40Q4G0X9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 RNU6-371P-201ENST00000364283 108 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 RNA5SP240-201ENST00000365355 128 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 MIR95-201ENST00000385072 81 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 MT-TH-201ENST00000387441 69 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC138623.1-201ENST00000418060 216 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 CALM2P2-201ENST00000428512 440 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AL356320.1-201ENST00000429616 163 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC009961.2-201ENST00000435771 251 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 USP9YP8-201ENST00000441913 500 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 MTCYBP1-201ENST00000454315 1119 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 RNA5SP364-201ENST00000516938 78 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 RNU6-685P-201ENST00000517088 95 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC087883.1-201ENST00000551882 391 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 MIR3682-201ENST00000581338 84 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 NDUFA8P1-201ENST00000605525 367 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AP001486.3-201ENST00000615334 372 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AL162373.1-201ENST00000620433 407 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 uc_338.20-201ENST00000621563 178 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC093648.1-201ENST00000623546 606 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AL359740.1-201ENST00000624340 592 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AC110994.2-201ENST00000635481 492 ntBASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC40Q4G0X9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 MIR17-201ENST00000385012 84 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 SNORA40.3-201ENST00000390964 122 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 SNORA46.1-201ENST00000391069 153 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 RN7SKP32-201ENST00000410167 303 ntBASIC2.24□□□□□ -2.05
CCDC40Q4G0X9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms