Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.12□□□□□ -1.75
SF3A1Q15459 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SF3A1Q15459 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.12□□□□□ -1.75
SF3A1Q15459 AC110774.1-201ENST00000623567 2018 ntBASIC4.12□□□□□ -1.75
SF3A1Q15459 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SF3A1Q15459 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SF3A1Q15459 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SF3A1Q15459 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SF3A1Q15459 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.11□□□□□ -1.75
SF3A1Q15459 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SF3A1Q15459 Y_RNA.58-201ENST00000362807 102 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 Y_RNA.154-201ENST00000363624 102 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 RNU6-593P-201ENST00000364716 112 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 RNY3P1-201ENST00000365085 102 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 RNY3-201ENST00000365484 102 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 Y_RNA.482-201ENST00000384377 111 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 Y_RNA.490-201ENST00000384413 102 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 RNU6-1297P-201ENST00000384415 104 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 RPS29P13-201ENST00000402041 169 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.11□□□□□ -1.75
SF3A1Q15459 MTND3P9-201ENST00000429526 346 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 AC018644.1-201ENST00000429934 551 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 OSTCP8-201ENST00000445117 448 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 AP001324.2-201ENST00000461163 319 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.11□□□□□ -1.75
SF3A1Q15459 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.11□□□□□ -1.75
SF3A1Q15459 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 AL591516.1-201ENST00000611326 274 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 AC241585.2-209ENST00000638217 143 ntBASIC4.11□□□□□ -1.75
SF3A1Q15459 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SF3A1Q15459 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.11□□□□□ -1.75
SF3A1Q15459 HAUS6P2-201ENST00000433254 2404 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.1□□□□□ -1.75
SF3A1Q15459 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AC138623.1-201ENST00000418060 216 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.1□□□□□ -1.75
SF3A1Q15459 SNRPGP7-201ENST00000469016 106 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AC114801.2-201ENST00000503825 781 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.1□□□□□ -1.75
SF3A1Q15459 RNU6-579P-201ENST00000516879 102 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 SNORA31.23-201ENST00000517219 133 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AC009812.2-201ENST00000517657 457 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.1□□□□□ -1.75
SF3A1Q15459 FRG2DP-202ENST00000566967 323 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC119674.1-207ENST00000641355 633 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SF3A1Q15459 AC068647.1-201ENST00000489539 2265 ntBASIC4.1□□□□□ -1.75
SF3A1Q15459 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SF3A1Q15459 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
SF3A1Q15459 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.09□□□□□ -1.75
SF3A1Q15459 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.75
SF3A1Q15459 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
SF3A1Q15459 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
SF3A1Q15459 RNA5SP387-201ENST00000364226 106 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 U3.39-201ENST00000408569 239 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 RNU6-1304P-201ENST00000411374 106 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AL445584.1-201ENST00000431451 330 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.09□□□□□ -1.75
SF3A1Q15459 AC004383.1-201ENST00000438135 289 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 DAP3P1-201ENST00000441522 278 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.09□□□□□ -1.75
SF3A1Q15459 AL133547.1-201ENST00000448546 220 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 Y_RNA.632-201ENST00000459189 102 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 RPL27AP5-201ENST00000469428 449 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 ACA59.1-201ENST00000515966 143 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.09□□□□□ -1.75
SF3A1Q15459 AP005902.1-201ENST00000521358 186 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 TGIF1P1-201ENST00000558095 802 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.09□□□□□ -1.75
SF3A1Q15459 AC011471.1-201ENST00000585766 187 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 VN1R107P-201ENST00000601784 209 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC018889.1-201ENST00000605372 397 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC069234.5-201ENST00000611056 416 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 PISRT1.1-201ENST00000616930 107 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.09□□□□□ -1.75
SF3A1Q15459 AC039056.2-201ENST00000622261 511 ntBASIC4.09□□□□□ -1.75
SF3A1Q15459 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.09□□□□□ -1.75
SF3A1Q15459 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SF3A1Q15459 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
SF3A1Q15459 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.09□□□□□ -1.76
SF3A1Q15459 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SF3A1Q15459 SNORA71.3-201ENST00000362582 128 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 SNORD46.1-201ENST00000364139 104 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 Y_RNA.259-201ENST00000364619 101 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 RNA5SP51-201ENST00000364750 119 ntBASIC4.08□□□□□ -1.76
SF3A1Q15459 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms