Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC131280.1-202ENST00000624067 4211 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RNU6-1085P-201ENST00000363576 107 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RNU6-1180P-201ENST00000364935 107 ntBASIC3.13□□□□□ -1.91
CTCFP49711 Y_RNA.372-201ENST00000365599 102 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RNU6-395P-201ENST00000365662 106 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RNU6-116P-201ENST00000384042 109 ntBASIC3.13□□□□□ -1.91
CTCFP49711 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CTCFP49711 FO393413.1-201ENST00000402892 195 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RNA5SP111-201ENST00000411386 101 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC007064.1-201ENST00000412238 351 ntBASIC3.13□□□□□ -1.91
CTCFP49711 NDUFS5P4-201ENST00000412983 318 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AF274854.1-201ENST00000413236 615 ntBASIC3.13□□□□□ -1.91
CTCFP49711 BPY2DP-201ENST00000422208 265 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.13□□□□□ -1.91
CTCFP49711 C8orf59P1-201ENST00000429930 303 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.13□□□□□ -1.91
CTCFP49711 AC000111.3-201ENST00000433478 193 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.13□□□□□ -1.91
CTCFP49711 AC073415.1-201ENST00000449240 153 ntBASIC3.13□□□□□ -1.91
CTCFP49711 MTATP6P7-201ENST00000453315 681 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC083798.1-201ENST00000472671 131 ntBASIC3.13□□□□□ -1.91
CTCFP49711 RN7SL633P-201ENST00000488974 297 ntBASIC3.13□□□□□ -1.91
CTCFP49711 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.13□□□□□ -1.91
CTCFP49711 Y_RNA.693-201ENST00000516641 110 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.13□□□□□ -1.91
CTCFP49711 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.13□□□□□ -1.91
CTCFP49711 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.13□□□□□ -1.91
CTCFP49711 AK6P1-201ENST00000540219 478 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.13□□□□□ -1.91
CTCFP49711 AC005498.1-201ENST00000592125 465 ntBASIC3.13□□□□□ -1.91
CTCFP49711 BNIP3P30-201ENST00000601184 574 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC080078.2-201ENST00000603766 501 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AC008945.2-201ENST00000606056 604 ntBASIC3.13□□□□□ -1.91
CTCFP49711 AL359198.2-201ENST00000611836 194 ntBASIC3.13□□□□□ -1.91
CTCFP49711 uc_338.11-201ENST00000619132 160 ntBASIC3.13□□□□□ -1.91
CTCFP49711 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.13□□□□□ -1.91
CTCFP49711 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.13□□□□□ -1.91
CTCFP49711 Y_RNA.122-201ENST00000363331 96 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RNU6-371P-201ENST00000364283 108 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RNU6-1322P-201ENST00000364309 107 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RNU6-996P-201ENST00000365438 107 ntBASIC3.12□□□□□ -1.91
CTCFP49711 MIR578-201ENST00000384828 96 ntBASIC3.12□□□□□ -1.91
CTCFP49711 MIR181A1-201ENST00000385026 110 ntBASIC3.12□□□□□ -1.91
CTCFP49711 MIR181B1-201ENST00000385240 110 ntBASIC3.12□□□□□ -1.91
CTCFP49711 MIR518E-201ENST00000385252 88 ntBASIC3.12□□□□□ -1.91
CTCFP49711 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CTCFP49711 RNU6-903P-201ENST00000391270 109 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RNU4-46P-201ENST00000410818 138 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC023141.4-201ENST00000412031 328 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.12□□□□□ -1.91
CTCFP49711 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.12□□□□□ -1.91
CTCFP49711 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.12□□□□□ -1.91
CTCFP49711 MTCYBP8-201ENST00000422855 651 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AL353729.1-201ENST00000425044 720 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC098614.2-201ENST00000426040 255 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AL358075.3-201ENST00000426289 226 ntBASIC3.12□□□□□ -1.91
CTCFP49711 HMGB1P9-201ENST00000429856 646 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RPL7P54-201ENST00000438336 674 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC016691.1-201ENST00000441321 413 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AL360271.2-201ENST00000447710 161 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.12□□□□□ -1.91
CTCFP49711 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.12□□□□□ -1.91
CTCFP49711 RN7SKP210-201ENST00000459176 261 ntBASIC3.12□□□□□ -1.91
CTCFP49711 RPL21P41-201ENST00000459863 264 ntBASIC3.12□□□□□ -1.91
CTCFP49711 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.12□□□□□ -1.91
CTCFP49711 RPS27P26-201ENST00000494583 239 ntBASIC3.12□□□□□ -1.91
CTCFP49711 SEM1P1-201ENST00000506694 209 ntBASIC3.12□□□□□ -1.91
CTCFP49711 MTCO3P9-201ENST00000506989 781 ntBASIC3.12□□□□□ -1.91
CTCFP49711 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.12□□□□□ -1.91
CTCFP49711 RNU6-314P-201ENST00000516574 104 ntBASIC3.12□□□□□ -1.91
CTCFP49711 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.12□□□□□ -1.91
CTCFP49711 HMGB1P33-201ENST00000563485 527 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.12□□□□□ -1.91
CTCFP49711 AC008739.2-201ENST00000597006 317 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AL138889.2-201ENST00000603883 242 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC004492.1-201ENST00000607036 742 ntBASIC3.12□□□□□ -1.91
CTCFP49711 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.12□□□□□ -1.91
CTCFP49711 WWP1P1-201ENST00000466609 2769 ntBASIC3.12□□□□□ -1.91
CTCFP49711 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
CTCFP49711 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.11□□□□□ -1.91
CTCFP49711 RNU6-552P-201ENST00000362869 119 ntBASIC3.11□□□□□ -1.91
CTCFP49711 RNU6-517P-201ENST00000384362 110 ntBASIC3.11□□□□□ -1.91
CTCFP49711 RNU6-658P-201ENST00000384606 106 ntBASIC3.11□□□□□ -1.91
CTCFP49711 MIR499A-201ENST00000384903 122 ntBASIC3.11□□□□□ -1.91
CTCFP49711 SNORA40C-201ENST00000391285 128 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.11□□□□□ -1.91
CTCFP49711 AL356057.3-201ENST00000402607 340 ntBASIC3.11□□□□□ -1.91
CTCFP49711 RNU2-29P-201ENST00000410423 189 ntBASIC3.11□□□□□ -1.91
CTCFP49711 USP9YP6-201ENST00000413550 854 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.11□□□□□ -1.91
CTCFP49711 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.11□□□□□ -1.91
CTCFP49711 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.11□□□□□ -1.91
CTCFP49711 GSTA11P-201ENST00000452866 669 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AP004217.1-201ENST00000480579 346 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AL163973.1-201ENST00000484753 577 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AIG1P1-201ENST00000503376 148 ntBASIC3.11□□□□□ -1.91
CTCFP49711 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.11□□□□□ -1.91
CTCFP49711 AC112206.3-201ENST00000514578 389 ntBASIC3.11□□□□□ -1.91
CTCFP49711 RNU6-572P-201ENST00000516724 80 ntBASIC3.11□□□□□ -1.91
CTCFP49711 SNORA31.19-201ENST00000517079 126 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms