Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU1-30P-201ENST00000606575 163 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC133104.2-201ENST00000615272 193 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AL161629.2-201ENST00000615347 275 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD3P31249 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD3P31249 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD3P31249 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD3P31249 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD3P31249 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD3P31249 RNU6-778P-201ENST00000363269 103 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 Y_RNA.148-201ENST00000363557 117 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RNU6-898P-201ENST00000365627 104 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RNU6-1160P-201ENST00000384546 104 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RNU1-89P-201ENST00000384592 164 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RNA5SP31-201ENST00000411144 127 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 Z92545.1-201ENST00000411782 234 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 ATP5A1P2-201ENST00000412323 255 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC018865.2-201ENST00000423631 129 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD3P31249 AL133396.1-201ENST00000432048 687 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RPL23AP50-201ENST00000434149 455 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC098831.1-201ENST00000440661 216 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AL035666.1-201ENST00000446195 348 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD3P31249 RNU6-1037P-201ENST00000459571 107 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD3P31249 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD3P31249 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD3P31249 RNU6-1045P-201ENST00000516321 107 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RNU4ATAC6P-201ENST00000516592 126 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RN7SKP295-201ENST00000517264 153 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 IGKV2OR2-8-201ENST00000558710 300 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 MIR4782-201ENST00000577987 79 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 CPDP1-201ENST00000579660 283 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD3P31249 BNIP3P16-201ENST00000589779 534 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 AC006504.6-201ENST00000590142 199 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 HMGB1P50-201ENST00000605814 607 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD3P31249 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD3P31249 AC093010.3-201ENST00000570269 15214 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD3P31249 AC006504.1-201ENST00000562493 3666 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 FAM35DP-201ENST00000323387 2712 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD3P31249 AC118273.1-201ENST00000525324 3006 ntBASIC2.82□□□□□ -1.96
HOXD3P31249 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.81□□□□□ -1.96
HOXD3P31249 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXD3P31249 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.81□□□□□ -1.96
HOXD3P31249 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXD3P31249 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD3P31249 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
HOXD3P31249 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 RNA5SP322-201ENST00000363617 119 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.81□□□□□ -1.96
HOXD3P31249 RNU6-72P-201ENST00000384285 79 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC096664.2-201ENST00000411843 406 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AL117339.3-201ENST00000418733 162 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 TMEM167AP1-201ENST00000423409 219 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD3P31249 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD3P31249 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD3P31249 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD3P31249 HIGD1AP2-201ENST00000446367 280 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD3P31249 RPL21P10-201ENST00000463521 490 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD3P31249 RNU6-976P-201ENST00000516086 111 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXD3P31249 AC007458.1-201ENST00000542812 373 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AL360157.1-201ENST00000565962 87 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC008737.2-201ENST00000599446 118 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD3P31249 AC009314.1-201ENST00000603871 304 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 HSPE1P7-201ENST00000604681 321 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AC008962.1-201ENST00000605729 304 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 AL591516.1-201ENST00000611326 274 ntBASIC2.81□□□□□ -1.96
HOXD3P31249 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD3P31249 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXD3P31249 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
HOXD3P31249 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD3P31249 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXD3P31249 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
HOXD3P31249 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD3P31249 RNU1-73P-201ENST00000383971 164 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 MIR518D-201ENST00000385014 87 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 MIR34A-201ENST00000385130 110 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AL513475.1-201ENST00000406602 315 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 RNU6-174P-201ENST00000410406 106 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 RNU6-55P-201ENST00000411092 107 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms