Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP003392.2-201ENST00000527269 208 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 SUB1P3-201ENST00000564581 315 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC007363.1-201ENST00000604736 620 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.08□□□□□ -2.24
HLA-DMBP28068 AC126544.2-201ENST00000625174 749 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 FARSBP1-201ENST00000435808 1778 ntBASIC1.08□□□□□ -2.24
HLA-DMBP28068 MIR424-201ENST00000362227 98 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 RNU6-529P-201ENST00000363383 104 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 RNU5A-8P-201ENST00000364102 114 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 RNU6-487P-201ENST00000365430 104 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 RNU6-843P-201ENST00000384454 104 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 MIR150-201ENST00000385048 84 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HLA-DMBP28068 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HLA-DMBP28068 USP9YP33-201ENST00000412220 421 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 USP9YP35-201ENST00000435696 412 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 RNU7-95P-201ENST00000459222 64 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 MTND1P16-201ENST00000465177 898 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 MTND1P36-201ENST00000522384 936 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 COPS8P3-201ENST00000526024 482 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 LRRC6P1-201ENST00000532188 885 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC022616.8-201ENST00000533569 253 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC018630.3-201ENST00000542637 96 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HLA-DMBP28068 AL021368.1-201ENST00000607490 540 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC093788.1-201ENST00000609356 927 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 uc_338.15-201ENST00000615470 191 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.07□□□□□ -2.24
HLA-DMBP28068 AC099654.8-201ENST00000637757 681 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 ZNF209P-201ENST00000593450 2304 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 RBBP8P1-201ENST00000449447 1844 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 HAUS6P2-201ENST00000433254 2404 ntBASIC1.07□□□□□ -2.24
HLA-DMBP28068 Y_RNA.110-201ENST00000363220 99 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 RNU6-546P-201ENST00000383991 107 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 USP9YP18-201ENST00000425912 695 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 MTCO3P5-201ENST00000433620 714 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 HMGB1P31-201ENST00000437242 427 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 MTCO2P20-201ENST00000437339 673 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 MTND4P25-201ENST00000441039 533 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC108059.3-201ENST00000456388 214 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 RPS29P23-201ENST00000458635 123 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 RNU6-953P-201ENST00000459154 107 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 RNA5SP216-201ENST00000516111 123 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 RNU6-1315P-201ENST00000517187 99 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC135279.1-201ENST00000543493 504 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 AL161670.1-201ENST00000554348 137 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC008269.2-201ENST00000561915 1105 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC136618.2-201ENST00000575091 400 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 WISP1-OT1-201ENST00000602893 642 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 AL596327.1-201ENST00000603629 213 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 CYP2C61P-201ENST00000604072 290 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.06□□□□□ -2.24
HLA-DMBP28068 AL512643.1-201ENST00000635735 524 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 MIR3529-201ENST00000637713 78 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 MTND5P42-201ENST00000637720 498 ntBASIC1.06□□□□□ -2.24
HLA-DMBP28068 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 RNU6-462P-201ENST00000362659 105 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 Y_RNA.164-201ENST00000363709 102 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 SNORA48.1-201ENST00000390879 135 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 RNU6-278P-201ENST00000390945 109 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 RNA5SP100-201ENST00000410903 110 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 RNA5SP59-201ENST00000410922 110 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC138623.1-201ENST00000418060 216 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 RAC1P6-201ENST00000423911 575 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC108729.1-201ENST00000487812 947 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 RN7SKP256-201ENST00000517201 314 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AP005660.1-201ENST00000522972 293 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.05□□□□□ -2.24
HLA-DMBP28068 BNIP3P27-201ENST00000599991 412 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.6-201ENST00000603753 252 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.11-201ENST00000604059 253 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AC008162.1-201ENST00000604718 254 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.1-201ENST00000604752 252 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.2-201ENST00000604983 252 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.5-201ENST00000605253 252 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.4-201ENST00000605279 254 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.12-201ENST00000605291 253 ntBASIC1.05□□□□□ -2.24
HLA-DMBP28068 AL670379.8-201ENST00000605353 252 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms