Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-1148P-201ENST00000410992 104 ntBASIC2.74□□□□□ -1.97
MSH3P20585 POLHP1-201ENST00000411806 470 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.74□□□□□ -1.97
MSH3P20585 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH3P20585 RNU7-167P-201ENST00000459160 62 ntBASIC2.74□□□□□ -1.97
MSH3P20585 snoU13.28-201ENST00000459235 104 ntBASIC2.74□□□□□ -1.97
MSH3P20585 RPS29P12-201ENST00000460178 152 ntBASIC2.74□□□□□ -1.97
MSH3P20585 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.74□□□□□ -1.97
MSH3P20585 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH3P20585 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 AC010486.1-201ENST00000511793 424 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AC025465.4-201ENST00000513422 638 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AC112206.3-201ENST00000514578 389 ntBASIC2.74□□□□□ -1.97
MSH3P20585 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH3P20585 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.74□□□□□ -1.97
MSH3P20585 PSMA3P-201ENST00000555485 635 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.74□□□□□ -1.97
MSH3P20585 AC007938.3-201ENST00000604965 623 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AL355073.2-201ENST00000612106 557 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 U6.42-201ENST00000618440 107 ntBASIC2.74□□□□□ -1.97
MSH3P20585 AC103705.1-201ENST00000619013 241 ntBASIC2.74□□□□□ -1.97
MSH3P20585 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 U2.21-201ENST00000637295 81 ntBASIC2.74□□□□□ -1.97
MSH3P20585 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
MSH3P20585 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.74□□□□□ -1.97
MSH3P20585 AC010680.1-201ENST00000590024 3590 ntBASIC2.73□□□□□ -1.97
MSH3P20585 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH3P20585 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
MSH3P20585 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
MSH3P20585 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
MSH3P20585 AL512633.1-201ENST00000399931 655 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AL138827.1-201ENST00000402666 306 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AL592148.1-201ENST00000413568 445 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AL353621.1-201ENST00000418219 243 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.73□□□□□ -1.97
MSH3P20585 AC105272.1-201ENST00000438604 198 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC025750.2-201ENST00000442609 450 ntBASIC2.73□□□□□ -1.97
MSH3P20585 BRK1P2-201ENST00000442875 223 ntBASIC2.73□□□□□ -1.97
MSH3P20585 PRPS1P1-201ENST00000445305 876 ntBASIC2.73□□□□□ -1.97
MSH3P20585 PMCHL2-203ENST00000457791 237 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC007547.1-201ENST00000462177 490 ntBASIC2.73□□□□□ -1.97
MSH3P20585 DYNLL1P5-201ENST00000467158 270 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC008571.1-201ENST00000467232 300 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC003982.1-202ENST00000469928 248 ntBASIC2.73□□□□□ -1.97
MSH3P20585 MTND3P25-201ENST00000509243 135 ntBASIC2.73□□□□□ -1.97
MSH3P20585 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH3P20585 RNU6-189P-201ENST00000516120 101 ntBASIC2.73□□□□□ -1.97
MSH3P20585 RNU6-826P-201ENST00000516827 104 ntBASIC2.73□□□□□ -1.97
MSH3P20585 RNU6-703P-201ENST00000516946 107 ntBASIC2.73□□□□□ -1.97
MSH3P20585 RNU6-1314P-201ENST00000517139 104 ntBASIC2.73□□□□□ -1.97
MSH3P20585 RPL7P20-201ENST00000520308 745 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC025755.1-201ENST00000521306 278 ntBASIC2.73□□□□□ -1.97
MSH3P20585 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.73□□□□□ -1.97
MSH3P20585 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.73□□□□□ -1.97
MSH3P20585 AC090115.3-201ENST00000553218 849 ntBASIC2.73□□□□□ -1.97
MSH3P20585 EIF4BP1-201ENST00000554881 351 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.73□□□□□ -1.97
MSH3P20585 ELOCP29-201ENST00000588193 334 ntBASIC2.73□□□□□ -1.97
MSH3P20585 BNIP3P25-201ENST00000596023 559 ntBASIC2.73□□□□□ -1.97
MSH3P20585 U2.17-201ENST00000611454 95 ntBASIC2.73□□□□□ -1.97
MSH3P20585 AL008636.1-201ENST00000625038 1018 ntBASIC2.73□□□□□ -1.97
MSH3P20585 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.73□□□□□ -1.97
MSH3P20585 AC121333.1-201ENST00000567488 2709 ntBASIC2.73□□□□□ -1.97
MSH3P20585 MTND4P35-201ENST00000604257 1375 ntBASIC2.73□□□□□ -1.97
MSH3P20585 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
MSH3P20585 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
MSH3P20585 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
MSH3P20585 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MSH3P20585 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSH3P20585 Y_RNA.100-201ENST00000363141 102 ntBASIC2.72□□□□□ -1.97
MSH3P20585 SNORD56.5-201ENST00000364281 72 ntBASIC2.72□□□□□ -1.97
MSH3P20585 Y_RNA.373-201ENST00000365600 103 ntBASIC2.72□□□□□ -1.97
MSH3P20585 RNU6-1179P-201ENST00000384667 107 ntBASIC2.72□□□□□ -1.97
MSH3P20585 RPS4XP7-201ENST00000406274 780 ntBASIC2.72□□□□□ -1.97
MSH3P20585 RNU6-607P-201ENST00000411283 108 ntBASIC2.72□□□□□ -1.97
MSH3P20585 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.72□□□□□ -1.97
MSH3P20585 AC099548.1-201ENST00000421443 426 ntBASIC2.72□□□□□ -1.97
MSH3P20585 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AL513185.2-201ENST00000425543 193 ntBASIC2.72□□□□□ -1.97
MSH3P20585 RN7SL297P-201ENST00000483161 293 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC083904.1-201ENST00000487828 231 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC114786.4-201ENST00000508771 728 ntBASIC2.72□□□□□ -1.97
MSH3P20585 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.72□□□□□ -1.97
MSH3P20585 FAM206BP-201ENST00000510179 541 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC008716.1-201ENST00000511084 513 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
MSH3P20585 AC138761.3-201ENST00000579993 334 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC005730.3-201ENST00000583067 366 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.72□□□□□ -1.97
MSH3P20585 AC011712.1-201ENST00000588959 234 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC092747.3-201ENST00000603769 301 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AC022306.2-201ENST00000617563 647 ntBASIC2.72□□□□□ -1.97
MSH3P20585 AL136221.1-201ENST00000621449 509 ntBASIC2.72□□□□□ -1.97
MSH3P20585 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.97
MSH3P20585 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
MSH3P20585 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH3P20585 RNU6-884P-201ENST00000363889 107 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms