Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HSPA8P1-201ENST00000425843 1833 ntBASIC4.04□□□□□ -1.76
COL6A1P12109 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL6A1P12109 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A1P12109 AC091812.1-201ENST00000432235 1948 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.03□□□□□ -1.76
COL6A1P12109 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A1P12109 RNA5SP374-201ENST00000362939 125 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNU6-842P-201ENST00000384269 107 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 SNORD17-201ENST00000390930 237 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNU6-823P-201ENST00000391042 103 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNU6-1109P-201ENST00000391187 107 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.03□□□□□ -1.76
COL6A1P12109 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.03□□□□□ -1.76
COL6A1P12109 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.03□□□□□ -1.76
COL6A1P12109 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A1P12109 AC008571.1-201ENST00000467232 300 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNA5SP208-201ENST00000516156 78 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNU4-77P-201ENST00000516692 156 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 RNU6-914P-201ENST00000516749 109 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 AC008489.1-201ENST00000524271 483 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.03□□□□□ -1.76
COL6A1P12109 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
COL6A1P12109 AL031601.2-202ENST00000622650 282 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL6A1P12109 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A1P12109 AC118273.1-201ENST00000525324 3006 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.03□□□□□ -1.76
COL6A1P12109 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL6A1P12109 AC005183.1-201ENST00000603687 1979 ntBASIC4.03□□□□□ -1.76
COL6A1P12109 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 LINC02471-203ENST00000641941 4752 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A1P12109 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 Y_RNA.151-201ENST00000363566 112 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RNU6-450P-201ENST00000364654 107 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 Y_RNA.314-201ENST00000365114 102 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RNU6-784P-201ENST00000384330 106 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RNU6-1197P-201ENST00000391183 107 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A1P12109 DBIP2-201ENST00000419076 262 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A1P12109 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A1P12109 HMGB1P9-201ENST00000429856 646 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC011742.1-201ENST00000431448 434 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 NDUFB4P6-201ENST00000436819 366 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A1P12109 DAP3P1-201ENST00000441522 278 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC112492.4-201ENST00000456549 352 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RN7SL429P-201ENST00000479090 223 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RN7SL489P-201ENST00000486185 223 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC011005.2-201ENST00000487324 359 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 RN7SL327P-201ENST00000488659 223 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC093663.1-201ENST00000497190 394 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A1P12109 SNORA31.22-201ENST00000517204 135 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC104576.1-201ENST00000524225 88 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.02□□□□□ -1.77
COL6A1P12109 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.02□□□□□ -1.77
COL6A1P12109 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A1P12109 LARP7P3-201ENST00000579888 337 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 OR1M4P-201ENST00000589199 287 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 AC012603.1-201ENST00000606424 528 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 RN7SL853P-201ENST00000617250 223 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 U2.1-201ENST00000618978 145 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.02□□□□□ -1.77
COL6A1P12109 AL353743.1-202ENST00000431724 1695 ntBASIC4.02□□□□□ -1.77
COL6A1P12109 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL6A1P12109 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A1P12109 AC004944.1-201ENST00000517807 3059 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A1P12109 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL6A1P12109 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.01□□□□□ -1.77
COL6A1P12109 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A1P12109 RNU6-26P-201ENST00000383985 107 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 Y_RNA.489-201ENST00000384410 101 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 RNU6-790P-201ENST00000384479 105 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 RNA5SP38-201ENST00000410750 119 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 AC092573.2-201ENST00000434546 243 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.01□□□□□ -1.77
COL6A1P12109 AC010655.3-201ENST00000478818 450 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 RN7SL504P-201ENST00000494496 287 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 AC025445.1-201ENST00000502728 300 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 MIR2114-201ENST00000516645 80 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A1P12109 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.01□□□□□ -1.77
COL6A1P12109 AC016727.2-201ENST00000603988 621 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 Z98751.3-201ENST00000604447 521 ntBASIC4.01□□□□□ -1.77
COL6A1P12109 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL6A1P12109 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4□□□□□ -1.77
COL6A1P12109 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 562.4 ms