Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL078601.1-201ENST00000444542 271 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AC003071.1-201ENST00000451219 789 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.54□□□□□ -2.16
SHOX2O60902 RPS29P23-201ENST00000458635 123 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 RNU1-98P-201ENST00000458992 160 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 ATP5EP1-201ENST00000510257 156 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.54□□□□□ -2.16
SHOX2O60902 RNA5SP395-201ENST00000516567 118 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AC009902.1-201ENST00000519351 183 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AP000907.2-201ENST00000530827 353 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.54□□□□□ -2.16
SHOX2O60902 AC136619.2-201ENST00000563361 631 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.54□□□□□ -2.16
SHOX2O60902 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.54□□□□□ -2.16
SHOX2O60902 AL358072.1-201ENST00000604156 575 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AC021646.1-201ENST00000605469 484 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AC107308.1-201ENST00000615897 301 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AL138955.1-201ENST00000622881 1040 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 AL136313.1-201ENST00000624804 202 ntBASIC1.54□□□□□ -2.16
SHOX2O60902 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SHOX2O60902 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SHOX2O60902 AP000648.3-201ENST00000623539 4507 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 SNORD114-19-201ENST00000363072 75 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 Y_RNA.251-201ENST00000364551 99 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 RNU6-701P-201ENST00000384059 107 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 Y_RNA.465-201ENST00000384293 102 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 MIR518D-201ENST00000385014 87 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AL591034.2-201ENST00000402839 359 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 RNU4-62P-201ENST00000410125 130 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.53□□□□□ -2.16
SHOX2O60902 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.53□□□□□ -2.16
SHOX2O60902 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.53□□□□□ -2.16
SHOX2O60902 RAC1P6-201ENST00000423911 575 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 MTCO3P46-201ENST00000425787 232 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.53□□□□□ -2.16
SHOX2O60902 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.53□□□□□ -2.16
SHOX2O60902 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.53□□□□□ -2.16
SHOX2O60902 AC087884.1-201ENST00000469738 328 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AC092991.1-201ENST00000477176 376 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.53□□□□□ -2.16
SHOX2O60902 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.53□□□□□ -2.16
SHOX2O60902 AC116353.3-201ENST00000511215 249 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 MTCYBP43-201ENST00000513621 740 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 Y_RNA.681-201ENST00000516445 113 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 SNORA31.19-201ENST00000517079 126 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 MTND1P36-201ENST00000522384 936 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.53□□□□□ -2.16
SHOX2O60902 AK6P1-201ENST00000540219 478 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.53□□□□□ -2.16
SHOX2O60902 MTND5P35-201ENST00000557537 1720 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AC005730.3-201ENST00000583067 366 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.53□□□□□ -2.16
SHOX2O60902 SEPT7P9-203ENST00000604116 343 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 ELOCP5-201ENST00000604924 333 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 AL589994.2-201ENST00000621124 579 ntBASIC1.53□□□□□ -2.16
SHOX2O60902 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.52□□□□□ -2.17
SHOX2O60902 MTND4P23-201ENST00000447723 1363 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.52□□□□□ -2.17
SHOX2O60902 RNU1-23P-201ENST00000363361 144 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 Y_RNA.192-201ENST00000363977 102 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 Y_RNA.327-201ENST00000365201 102 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 RPS12P24-201ENST00000412619 387 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.52□□□□□ -2.17
SHOX2O60902 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.52□□□□□ -2.17
SHOX2O60902 HSPE1P21-201ENST00000438283 308 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AC245102.2-201ENST00000448956 180 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.52□□□□□ -2.17
SHOX2O60902 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.52□□□□□ -2.17
SHOX2O60902 RNU6-586P-201ENST00000517265 104 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.52□□□□□ -2.17
SHOX2O60902 AC068587.4-201ENST00000533893 186 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AC016957.1-201ENST00000534895 309 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.52□□□□□ -2.17
SHOX2O60902 BNIP3P25-201ENST00000596023 559 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 BNIP3P27-201ENST00000599991 412 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 WISP1-OT1-201ENST00000602893 642 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AL391646.1-201ENST00000603860 190 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 NDUFA8P1-201ENST00000605525 367 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AC018638.7-201ENST00000605836 1114 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 AC091304.6-201ENST00000619761 202 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 Z99571.1-201ENST00000636677 394 ntBASIC1.52□□□□□ -2.17
SHOX2O60902 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SHOX2O60902 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.51□□□□□ -2.17
SHOX2O60902 RNA5SP190-201ENST00000365222 118 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 RNA5SP465-201ENST00000391195 109 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 SNORA40C-201ENST00000391285 128 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 CISD1P1-201ENST00000393907 327 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 AL133475.1-201ENST00000404414 305 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 MTATP6P20-201ENST00000414147 562 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.51□□□□□ -2.17
SHOX2O60902 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.51□□□□□ -2.17
SHOX2O60902 AL358453.1-201ENST00000422522 250 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.51□□□□□ -2.17
SHOX2O60902 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.51□□□□□ -2.17
SHOX2O60902 TXNL1P1-201ENST00000429528 554 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 USP9YP24-201ENST00000434374 697 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.51□□□□□ -2.17
SHOX2O60902 AMD1P1-201ENST00000457220 922 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 SNORD97-201ENST00000459187 142 ntBASIC1.51□□□□□ -2.17
SHOX2O60902 AC006512.1-201ENST00000468816 291 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms