Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.11□□□□□ -2.07
MSH4O15457 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.11□□□□□ -2.07
MSH4O15457 RNU6-237P-201ENST00000515985 71 ntBASIC2.11□□□□□ -2.07
MSH4O15457 MIR892C-201ENST00000516410 77 ntBASIC2.11□□□□□ -2.07
MSH4O15457 RNU6-1220P-201ENST00000517126 108 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AK6P1-201ENST00000540219 478 ntBASIC2.11□□□□□ -2.07
MSH4O15457 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH4O15457 AL158211.1-201ENST00000566763 763 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AC025678.1-201ENST00000567861 338 ntBASIC2.11□□□□□ -2.07
MSH4O15457 DEFB131E-202ENST00000602581 683 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AL670379.10-201ENST00000604330 253 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AL670379.9-201ENST00000605428 253 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AC008250.2-201ENST00000615261 205 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AC108479.2-201ENST00000617314 601 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AC024581.2-201ENST00000619986 252 ntBASIC2.11□□□□□ -2.07
MSH4O15457 AC138627.2-201ENST00000624202 601 ntBASIC2.11□□□□□ -2.07
MSH4O15457 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
MSH4O15457 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 MIR412-201ENST00000362142 91 ntBASIC2.1□□□□□ -2.07
MSH4O15457 Y_RNA.22-201ENST00000362492 102 ntBASIC2.1□□□□□ -2.07
MSH4O15457 SNORD3E-201ENST00000362899 217 ntBASIC2.1□□□□□ -2.07
MSH4O15457 Y_RNA.169-201ENST00000363745 96 ntBASIC2.1□□□□□ -2.07
MSH4O15457 MIR583-201ENST00000384846 75 ntBASIC2.1□□□□□ -2.07
MSH4O15457 MIR9-3-201ENST00000385084 90 ntBASIC2.1□□□□□ -2.07
MSH4O15457 FTH1P15-201ENST00000406984 280 ntBASIC2.1□□□□□ -2.07
MSH4O15457 RNU6-1140P-201ENST00000410517 106 ntBASIC2.1□□□□□ -2.07
MSH4O15457 RPS3AP3-201ENST00000411933 242 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.1□□□□□ -2.07
MSH4O15457 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 CYCSP46-201ENST00000423569 204 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 RPS3AP44-201ENST00000425466 790 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
MSH4O15457 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.1□□□□□ -2.07
MSH4O15457 RPL7P12-201ENST00000446719 750 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC112771.1-201ENST00000463581 102 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC079804.2-201ENST00000490376 200 ntBASIC2.1□□□□□ -2.07
MSH4O15457 RPS29P11-201ENST00000496507 171 ntBASIC2.1□□□□□ -2.07
MSH4O15457 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 RNU6-295P-201ENST00000516901 104 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH4O15457 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.1□□□□□ -2.07
MSH4O15457 AC015712.3-201ENST00000559380 164 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC092325.1-201ENST00000566449 554 ntBASIC2.1□□□□□ -2.07
MSH4O15457 DEFB122-202ENST00000569013 197 ntBASIC2.1□□□□□ -2.07
MSH4O15457 AC087045.1-201ENST00000605856 382 ntBASIC2.1□□□□□ -2.07
MSH4O15457 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.1□□□□□ -2.07
MSH4O15457 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
MSH4O15457 RNU6-858P-201ENST00000362436 107 ntBASIC2.09□□□□□ -2.07
MSH4O15457 U8.3-201ENST00000363321 132 ntBASIC2.09□□□□□ -2.07
MSH4O15457 MIR524-201ENST00000385242 87 ntBASIC2.09□□□□□ -2.07
MSH4O15457 MT-TH-201ENST00000387441 69 ntBASIC2.09□□□□□ -2.07
MSH4O15457 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
MSH4O15457 CIR1P3-201ENST00000405137 479 ntBASIC2.09□□□□□ -2.07
MSH4O15457 Y_RNA.623-201ENST00000411128 95 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AL353621.1-201ENST00000418219 243 ntBASIC2.09□□□□□ -2.07
MSH4O15457 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH4O15457 AL365338.1-201ENST00000422282 858 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH4O15457 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AL445567.1-201ENST00000439121 144 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.09□□□□□ -2.07
MSH4O15457 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
MSH4O15457 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH4O15457 AL139109.1-201ENST00000455491 297 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH4O15457 AC112206.3-201ENST00000514578 389 ntBASIC2.09□□□□□ -2.07
MSH4O15457 SCARNA24.1-201ENST00000516465 137 ntBASIC2.09□□□□□ -2.07
MSH4O15457 Vault.3-201ENST00000516676 95 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AP005902.1-201ENST00000521358 186 ntBASIC2.09□□□□□ -2.07
MSH4O15457 MTND3P12-201ENST00000559068 328 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AC145350.1-201ENST00000567426 208 ntBASIC2.09□□□□□ -2.07
MSH4O15457 MIR548AC-201ENST00000585049 88 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AC025754.2-201ENST00000606491 432 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AC245884.12-201ENST00000615364 59 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AL603839.4-201ENST00000624658 1005 ntBASIC2.09□□□□□ -2.07
MSH4O15457 AL157786.1-207ENST00000627771 695 ntBASIC2.09□□□□□ -2.07
MSH4O15457 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
MSH4O15457 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 AC138393.1-203ENST00000327086 343 ntBASIC2.08□□□□□ -2.08
MSH4O15457 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 RNU4-21P-201ENST00000362802 126 ntBASIC2.08□□□□□ -2.08
MSH4O15457 SNORA40.3-201ENST00000390964 122 ntBASIC2.08□□□□□ -2.08
MSH4O15457 HMGB3P2-201ENST00000411913 584 ntBASIC2.08□□□□□ -2.08
MSH4O15457 HMGN1P14-201ENST00000412459 517 ntBASIC2.08□□□□□ -2.08
MSH4O15457 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
MSH4O15457 CYCSP49-201ENST00000420810 319 ntBASIC2.08□□□□□ -2.08
MSH4O15457 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.08□□□□□ -2.08
MSH4O15457 RPL7P34-201ENST00000433316 712 ntBASIC2.08□□□□□ -2.08
MSH4O15457 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH4O15457 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 202.4 ms