Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 RNU6-414P-201ENST00000363705 104 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AL356776.1-201ENST00000406574 447 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 NCOR1P3-201ENST00000420479 303 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC88BA6NC98 SNORA25.11-201ENST00000515935 105 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.24□□□□□ -2.37
CCDC88BA6NC98 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AC006199.1-201ENST00000548728 219 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AC007490.1-201ENST00000624321 703 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AL359854.1-201ENST00000614203 1594 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 AC023934.1-201ENST00000574529 2389 ntBASIC0.24□□□□□ -2.37
CCDC88BA6NC98 CETN4P-201ENST00000432407 469 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 KATNBL1P6-201ENST00000453433 915 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 AC104629.2-201ENST00000468627 598 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 CYCTP-201ENST00000504253 315 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 AC067904.2-201ENST00000517322 1283 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.23□□□□□ -2.37
CCDC88BA6NC98 SNORA77B-201ENST00000578179 125 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 AL022345.1-201ENST00000607292 135 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 uc_338.14-201ENST00000613162 166 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 AC009950.2-201ENST00000636548 183 ntBASIC0.23□□□□□ -2.37
CCDC88BA6NC98 RNU1-58P-201ENST00000362413 163 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 SNORD114-15-201ENST00000364687 72 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 RNU6-110P-201ENST00000384508 104 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 MIR605-201ENST00000385078 83 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 HMGB1P17-201ENST00000403495 628 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 SSR1P1-201ENST00000407630 814 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 RNA5SP100-201ENST00000410903 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 RNA5SP59-201ENST00000410922 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AC245102.2-201ENST00000448956 180 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 LARP1BP2-201ENST00000486594 519 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 OR5AK1P-201ENST00000524837 922 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AC018659.1-201ENST00000551083 169 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 MIR4768-201ENST00000585270 74 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AC010738.1-201ENST00000604970 987 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL138713.1-201ENST00000624026 2130 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 Y_RNA.170-201ENST00000363746 110 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL022718.1-201ENST00000412004 84 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 NANOGP2-201ENST00000435391 727 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL358794.1-201ENST00000445689 381 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88BA6NC98 AC018868.1-201ENST00000491307 315 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 SMURF2P1-201ENST00000514992 481 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 ADAM3B-201ENST00000569937 840 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC0.22□□□□□ -2.37
CCDC88BA6NC98 RNA5SP331-201ENST00000364986 107 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 SNORA4.3-201ENST00000365564 137 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC114482.1-201ENST00000418010 247 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC139712.2-201ENST00000424302 339 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 RPL31P53-201ENST00000457065 348 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 RNU6-758P-201ENST00000516292 89 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC090142.3-201ENST00000519012 385 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC090079.2-201ENST00000575289 768 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC015688.2-201ENST00000584523 262 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC005261.5-201ENST00000596280 355 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AL391813.1-201ENST00000603098 260 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 Z83818.1-201ENST00000603584 150 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC092953.2-201ENST00000608000 699 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 AC009033.1-201ENST00000624279 431 ntBASIC0.21□□□□□ -2.38
CCDC88BA6NC98 RNU6-884P-201ENST00000363889 107 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 RNU4-12P-201ENST00000365233 139 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC88BA6NC98 RNU6-730P-201ENST00000383954 104 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC88BA6NC98 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CCDC88BA6NC98 RPEP5-201ENST00000441137 268 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 RPL22P13-201ENST00000493291 347 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 BOLA3P3-201ENST00000505182 232 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 SNORA31.17-201ENST00000516953 127 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.2□□□□□ -2.38
CCDC88BA6NC98 AC124293.1-201ENST00000530034 493 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 AL049870.4-201ENST00000555741 486 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CCDC88BA6NC98 ZNF663P-202ENST00000641770 1131 ntBASIC0.2□□□□□ -2.38
CCDC88BA6NC98 SNORD114-24-201ENST00000365029 72 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 RNU6-98P-201ENST00000384173 107 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 RNU6-700P-201ENST00000391043 107 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 RPL36AP53-201ENST00000432891 316 ntBASIC0.19□□□□□ -2.38
CCDC88BA6NC98 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms