Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 LINC02471-203ENST00000641941 4752 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.237-201ENST00000364439 102 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.314-201ENST00000365114 102 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.353-201ENST00000365440 108 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 RNU6-516P-201ENST00000411381 104 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 RPL21P38-201ENST00000418090 167 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC003685.2-201ENST00000422795 395 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 EIF4EP2-201ENST00000422816 654 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL118520.1-201ENST00000450770 291 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC004801.2-202ENST00000463559 283 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC010683.1-201ENST00000473673 378 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC024405.2-202ENST00000532731 184 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL133153.1-201ENST00000557756 303 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AL138726.1-201ENST00000614873 333 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AP001486.3-201ENST00000615334 372 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 AC130454.1-201ENST00000622948 401 ntBASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.07□□□□□ -1.6
COL17A1Q9UMD9 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 RNU6-804P-201ENST00000384286 107 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 RNU4-46P-201ENST00000410818 138 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 RNU6-55P-201ENST00000411092 107 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 RPS15AP40-201ENST00000419621 391 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 CALM2P2-201ENST00000428512 440 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 USP9YP30-201ENST00000430729 455 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 SNAP23P1-201ENST00000433229 246 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AC091021.1-201ENST00000468051 388 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 RPS27AP18-201ENST00000515536 459 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 NDUFB9P3-201ENST00000521269 501 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AP001005.3-201ENST00000622049 129 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 MIR7843-201ENST00000622274 79 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 AC025034.2-201ENST00000623264 286 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 MIR4272-201ENST00000635924 64 ntBASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL17A1Q9UMD9 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 GABPAP-201ENST00000419271 1356 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.105-201ENST00000363182 111 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.199-201ENST00000364014 102 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 RNY3P11-201ENST00000364153 102 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.418-201ENST00000384029 102 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 RNU2-25P-201ENST00000411041 191 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC099336.2-201ENST00000422457 254 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AL109933.2-201ENST00000452651 260 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC099560.2-201ENST00000457554 255 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC098869.1-201ENST00000481627 292 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC105758.1-201ENST00000506038 399 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC008716.1-201ENST00000511084 513 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AL133271.1-201ENST00000538229 291 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 AC092747.3-201ENST00000603769 301 ntBASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL17A1Q9UMD9 PHKBP1-201ENST00000450951 1951 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.48-201ENST00000362710 103 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 MRPL35P1-201ENST00000404272 572 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 RN7SKP51-201ENST00000410781 304 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 USMG5P1-201ENST00000425964 177 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 RNU6-919P-201ENST00000516731 104 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 RNA5SP170-201ENST00000517150 101 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 AL078605.1-201ENST00000603529 500 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 AC002044.1-201ENST00000606707 158 ntBASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 AC011155.2-201ENST00000623202 216 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms