Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 AL591034.1-201ENST00000407447 340 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AC092047.1-201ENST00000424997 240 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 ARF4P2-201ENST00000430209 526 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 SSXP4-201ENST00000451349 245 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RPS23P7-201ENST00000466210 444 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AC104564.1-201ENST00000493028 407 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 MRPL49P2-201ENST00000521066 465 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AC244505.7-201ENST00000599675 272 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 AL110115.1-201ENST00000614396 364 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 U4.7-201ENST00000638126 106 ntBASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.79□□□□□ -1.64
BRPF3Q9ULD4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AC010733.2-201ENST00000589496 5702 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 Y_RNA.214-201ENST00000364201 112 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RNU6-72P-201ENST00000384285 79 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 MIR628-201ENST00000385229 95 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RNA5SP494-201ENST00000410653 129 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 MTCO3P19-201ENST00000415864 321 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 C4BPAP2-201ENST00000428434 478 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 HMGB3P8-201ENST00000449709 577 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AC079354.2-201ENST00000453523 154 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AL136097.1-201ENST00000456945 913 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RPS29P27-201ENST00000463711 170 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RPL30P10-201ENST00000488148 337 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RN7SL604P-201ENST00000492589 296 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 SNORA31.9-201ENST00000516429 84 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AMZ2P1-203ENST00000565833 850 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 MIR5684-201ENST00000585074 65 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 AC125232.2-201ENST00000592457 143 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 RAC1P9-201ENST00000604990 392 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 MIR6716-201ENST00000613413 80 ntBASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
BRPF3Q9ULD4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNU6-227P-201ENST00000362865 103 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNU6-78P-201ENST00000362897 107 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.222-201ENST00000364264 102 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNA5SP130-201ENST00000364431 114 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNU6-336P-201ENST00000364891 107 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 MT-TR-201ENST00000387439 65 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RPS29P13-201ENST00000402041 169 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RN7SKP58-201ENST00000411010 305 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 ELOCP20-201ENST00000422460 345 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC002075.2-201ENST00000425207 252 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RPL30P5-201ENST00000494923 336 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNU6-408P-201ENST00000515910 100 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 SNORA25.11-201ENST00000515935 105 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RNU6-911P-201ENST00000516523 104 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 IGHV3-76-201ENST00000522465 295 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 MIR4782-201ENST00000577987 79 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC078899.3-201ENST00000599065 212 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 RPS29P30-201ENST00000600975 111 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 AC008962.1-201ENST00000605729 304 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 MIR6867-201ENST00000610636 67 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 MIR6810-201ENST00000622701 70 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 SCARNA4-202ENST00000625402 129 ntBASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
BRPF3Q9ULD4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 FTLP6-201ENST00000355274 422 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 RNA5SP443-201ENST00000363083 132 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.288-201ENST00000364854 92 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 SNORA62-201ENST00000365493 153 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.461-201ENST00000384263 103 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 RNU6-472P-201ENST00000384299 107 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 Y_RNA.592-201ENST00000410274 109 ntBASIC4.76□□□□□ -1.65
BRPF3Q9ULD4 HSPE1P12-201ENST00000412576 301 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms