Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC003982.1-202ENST00000469928 248 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC090096.1-201ENST00000489168 390 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 MTND3P5-201ENST00000512798 333 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC090136.1-201ENST00000520009 240 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC079598.5-201ENST00000547460 117 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS28Q9UK41 AC008752.3-201ENST00000588113 712 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 RPS15AP11-201ENST00000594193 385 ntBASIC2.82□□□□□ -1.96
VPS28Q9UK41 AL161431.1-201ENST00000618966 4205 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 RNU1-112P-201ENST00000364401 164 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 RNU6-517P-201ENST00000384362 110 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS28Q9UK41 RNU2-3P-201ENST00000410144 191 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 RNU2-66P-201ENST00000410650 161 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC112771.1-201ENST00000463581 102 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 RPS27AP9-201ENST00000477681 438 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC103975.1-201ENST00000482506 483 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 RN7SKP219-201ENST00000516825 296 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 RPL7P20-201ENST00000520308 745 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AP005435.4-201ENST00000529514 284 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 ELOCP31-201ENST00000540463 467 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 CR383656.8-201ENST00000549046 145 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AGGF1P4-201ENST00000568249 801 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 MTCYBP33-201ENST00000575007 1130 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 MIR4319-201ENST00000577285 85 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 AP001596.2-201ENST00000608410 312 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 Z99129.1-201ENST00000612510 255 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AC024581.2-201ENST00000619986 252 ntBASIC2.81□□□□□ -1.96
VPS28Q9UK41 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS28Q9UK41 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS28Q9UK41 RBBP8P1-201ENST00000449447 1844 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 MTND4P14-201ENST00000435799 1354 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU6-487P-201ENST00000365430 104 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU6-434P-201ENST00000384376 107 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU6-843P-201ENST00000384454 104 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU6-393P-201ENST00000384475 107 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 Y_RNA.510-201ENST00000384511 114 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 Y_RNA.559-201ENST00000384686 107 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL360182.1-201ENST00000397433 468 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU2-16P-201ENST00000410712 136 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNA5SP21-201ENST00000410917 96 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 SNRPFP3-201ENST00000457792 225 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU7-26P-201ENST00000458980 63 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RPL7P43-201ENST00000478876 753 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 SMURF2P1-201ENST00000514992 481 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 SNORA25.11-201ENST00000515935 105 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 RNU6-826P-201ENST00000516827 104 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 MIR5571-201ENST00000577998 113 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 MTATP6P3-201ENST00000581686 676 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC012507.3-201ENST00000603556 477 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC104073.3-201ENST00000610942 955 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AL031601.2-202ENST00000622650 282 ntBASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS28Q9UK41 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
VPS28Q9UK41 AC006020.1-201ENST00000420179 1854 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 MTND5P26-201ENST00000426018 1752 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
VPS28Q9UK41 RNU6-552P-201ENST00000362869 119 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 RNU6-996P-201ENST00000365438 107 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 OR5H15-201ENST00000383696 930 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 RNU6-259P-201ENST00000383999 107 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 SNORD116-20-201ENST00000384529 92 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 RNU6-1127P-201ENST00000384580 107 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 MIR592-201ENST00000384959 97 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 MIR9-1-201ENST00000385198 89 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 RNU6-903P-201ENST00000391270 109 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC068050.1-201ENST00000394891 380 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AL591416.1-201ENST00000404015 867 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 CYCSP33-201ENST00000414485 327 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 NUP35P1-201ENST00000422734 947 ntBASIC2.79□□□□□ -1.96
VPS28Q9UK41 AC063976.3-201ENST00000426849 329 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms