Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.623-201ENST00000411128 95 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 AL627311.1-201ENST00000431514 115 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RPL39P40-201ENST00000445481 146 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AL583843.1-201ENST00000456070 346 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AL590639.1-201ENST00000456484 337 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU7-180P-201ENST00000459240 63 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 snoU13.15-201ENST00000459407 104 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC006512.1-201ENST00000468816 291 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.34□□□□□ -2.03
LIME1Q9H400 TRBV1-201ENST00000476502 284 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.34□□□□□ -2.03
LIME1Q9H400 AL163973.1-201ENST00000484753 577 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC011005.2-201ENST00000487324 359 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 AC009646.1-201ENST00000510455 318 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 RNU6-835P-201ENST00000516974 104 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LIME1Q9H400 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 HMGB1P33-201ENST00000563485 527 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 MIR4782-201ENST00000577987 79 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.34□□□□□ -2.03
LIME1Q9H400 MIR4424-201ENST00000585257 86 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AL670379.4-201ENST00000605279 254 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC012557.2-201ENST00000605919 418 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.34□□□□□ -2.03
LIME1Q9H400 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LIME1Q9H400 CR381653.2-201ENST00000624041 768 ntBASIC2.34□□□□□ -2.03
LIME1Q9H400 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.33□□□□□ -2.04
LIME1Q9H400 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU6-384P-201ENST00000364900 104 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU6-715P-201ENST00000365204 103 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 Y_RNA.409-201ENST00000383990 98 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU6-780P-201ENST00000391030 104 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL139039.1-201ENST00000401900 692 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL591416.1-201ENST00000404015 867 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RPS4XP7-201ENST00000406274 780 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU2-3P-201ENST00000410144 191 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU6-648P-201ENST00000410190 107 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNU6-607P-201ENST00000411283 108 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RNA5SP111-201ENST00000411386 101 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 USP9YP6-201ENST00000413550 854 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 FAM92A1P2-202ENST00000504766 877 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AC096725.1-201ENST00000514266 313 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 SNORA9.3-201ENST00000516383 129 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 RPL7P20-201ENST00000520308 745 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 HPRT1P3-201ENST00000539521 576 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AK6P1-201ENST00000540219 478 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 ELOCP31-201ENST00000540463 467 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 HIF1AP1-201ENST00000553642 175 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 MIR3605-201ENST00000583214 100 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC020895.1-201ENST00000595362 272 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC008739.2-201ENST00000597006 317 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL391813.1-201ENST00000603098 260 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL645944.1-201ENST00000603857 493 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AL021997.1-201ENST00000605757 193 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AC093788.1-201ENST00000609356 927 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC122108.2-201ENST00000611946 526 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 AC098679.4-201ENST00000624241 654 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 U6.99-201ENST00000637524 83 ntBASIC2.33□□□□□ -2.04
LIME1Q9H400 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.33□□□□□ -2.04
LIME1Q9H400 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.33□□□□□ -2.04
LIME1Q9H400 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.33□□□□□ -2.04
LIME1Q9H400 ZNF658B-202ENST00000615961 3375 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
LIME1Q9H400 Y_RNA.381-201ENST00000365666 102 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 RNU6-1215P-201ENST00000384441 102 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 RNU6-45P-201ENST00000384471 107 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AL512633.1-201ENST00000399931 655 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.32□□□□□ -2.04
LIME1Q9H400 Z98742.3-201ENST00000418637 326 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 ATG3P1-201ENST00000419507 911 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 MTCYBP8-201ENST00000422855 651 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.32□□□□□ -2.04
LIME1Q9H400 RPL7P37-201ENST00000425095 738 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AC007560.1-201ENST00000426912 237 ntBASIC2.32□□□□□ -2.04
LIME1Q9H400 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.32□□□□□ -2.04
LIME1Q9H400 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.32□□□□□ -2.04
LIME1Q9H400 RPL7P54-201ENST00000438336 674 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms