Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 RNY3P3-201ENST00000363816 102 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 RNU6-996P-201ENST00000365438 107 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1029P-201ENST00000384109 107 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.481-201ENST00000384373 102 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.576-201ENST00000384781 102 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MIR764-201ENST00000390811 85 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MIR1289-2-201ENST00000408360 111 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 Z85995.1-201ENST00000415547 335 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC096638.1-201ENST00000444678 216 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 DDX3P2-201ENST00000446138 111 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 RNU7-63P-201ENST00000459054 62 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MTCO3P9-201ENST00000506989 781 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC108078.2-201ENST00000510750 236 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 RNA5SP401-201ENST00000515920 127 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 SUB1P1-201ENST00000524415 382 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 OR5AL2P-201ENST00000532185 920 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL162413.1-201ENST00000603198 110 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.6-201ENST00000603753 252 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.11-201ENST00000604059 253 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC013553.2-201ENST00000604244 589 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC008162.1-201ENST00000604718 254 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.1-201ENST00000604752 252 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC019159.1-201ENST00000605094 187 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.5-201ENST00000605253 252 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.12-201ENST00000605291 253 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.8-201ENST00000605353 252 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AL670379.7-201ENST00000605823 252 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 MIR4275-201ENST00000636486 87 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC024614.3-201ENST00000637860 256 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC069528.2-201ENST00000624849 1991 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 AC004520.1-201ENST00000608362 1413 ntBASIC2.68□□□□□ -1.98
UPF3AQ9H1J1 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 SNORD114-1-201ENST00000362705 72 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.88-201ENST00000363029 99 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 Y_RNA.255-201ENST00000364581 97 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1180P-201ENST00000364935 107 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 RNU6-903P-201ENST00000391270 109 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 NDUFB4P7-201ENST00000423198 363 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 RPL27AP8-201ENST00000424277 446 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 NEFMP1-201ENST00000443423 1006 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 MTND1P18-201ENST00000448191 573 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 TBCAP3-201ENST00000512475 312 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 TTC39CP1-201ENST00000512513 755 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 SCARNA15.2-201ENST00000516409 127 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 RNU6-1178P-201ENST00000516674 107 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 RNA5SP471-201ENST00000516971 106 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AL138976.2-201ENST00000563989 694 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC068135.2-201ENST00000569293 1028 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC009163.5-201ENST00000575421 637 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC008521.1-201ENST00000587471 187 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC020895.1-201ENST00000595362 272 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC008945.2-201ENST00000606056 604 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC009570.1-201ENST00000609599 745 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AL365204.3-201ENST00000612448 685 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC024940.5-201ENST00000622889 474 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AC241585.2-209ENST00000638217 143 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 SDAD1P2-201ENST00000441308 2028 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 CKAP2P1-201ENST00000555477 2049 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 AL137003.2-201ENST00000606924 2538 ntBASIC2.67□□□□□ -1.98
UPF3AQ9H1J1 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 RNU6-552P-201ENST00000362869 119 ntBASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 RNU6-179P-201ENST00000363350 107 ntBASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 RNU4-20P-201ENST00000365601 151 ntBASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 DEFA7P-201ENST00000382676 285 ntBASIC2.66□□□□□ -1.98
UPF3AQ9H1J1 RPS4XP3-201ENST00000398541 413 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 226 ms