Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Z99289.3-201ENST00000605586 594 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC008250.2-201ENST00000615261 205 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC009090.3-201ENST00000616553 565 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC108479.2-201ENST00000617314 601 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS35Q96QK1 AC019226.2-201ENST00000625973 424 ntBASIC2.17□□□□□ -2.06
VPS35Q96QK1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS35Q96QK1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS35Q96QK1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS35Q96QK1 OR56A5-201ENST00000340110 738 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 RNY4P34-201ENST00000364779 95 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 RNU6-61P-201ENST00000365528 109 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 RNU6-72P-201ENST00000384285 79 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 MIR578-201ENST00000384828 96 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 SRIP2-201ENST00000428470 166 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC140059.1-201ENST00000489238 361 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 RBBP4P6-201ENST00000508098 202 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 Vault.3-201ENST00000516676 95 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 MIR4448-201ENST00000584360 86 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AL138889.2-201ENST00000603883 242 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AL121992.2-201ENST00000606262 256 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 U4atac.1-201ENST00000618345 95 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 U6.42-201ENST00000618440 107 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AL603755.1-201ENST00000619504 163 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 MIR5739-201ENST00000619803 80 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 MIR6873-201ENST00000622788 63 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 AL603839.4-201ENST00000624658 1005 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS35Q96QK1 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS35Q96QK1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS35Q96QK1 AC092881.1-201ENST00000638218 2733 ntBASIC2.16□□□□□ -2.06
VPS35Q96QK1 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
VPS35Q96QK1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.15□□□□□ -2.06
VPS35Q96QK1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.15□□□□□ -2.06
VPS35Q96QK1 RBBP8P1-201ENST00000449447 1844 ntBASIC2.15□□□□□ -2.06
VPS35Q96QK1 RNU6-179P-201ENST00000363350 107 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 RNU6-169P-201ENST00000365336 107 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 RNU1-148P-201ENST00000384472 162 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 RNU6-1179P-201ENST00000384667 107 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS35Q96QK1 U3.40-201ENST00000408706 208 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 HMGN1P14-201ENST00000412459 517 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AL139415.2-201ENST00000431968 163 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC073614.1-201ENST00000438690 650 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC124916.1-201ENST00000444020 547 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 snoU109.2-201ENST00000459316 135 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VPS35Q96QK1 CKS1BP2-201ENST00000497342 240 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC117522.2-201ENST00000510049 657 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AP004607.1-201ENST00000524456 203 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AL138976.2-201ENST00000563989 694 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 MTCYBP33-201ENST00000575007 1130 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC008521.1-201ENST00000587471 187 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC002984.1-201ENST00000591692 448 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 BNIP3P30-201ENST00000601184 574 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC090578.1-201ENST00000604955 591 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC068276.1-201ENST00000605793 379 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 AC096772.1-201ENST00000609146 564 ntBASIC2.15□□□□□ -2.07
VPS35Q96QK1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS35Q96QK1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS35Q96QK1 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS35Q96QK1 RNU4-21P-201ENST00000362802 126 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 RNU6-942P-201ENST00000363002 107 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 MT-TH-201ENST00000387441 69 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 RN7SKP158-201ENST00000410453 326 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 RNA5SP111-201ENST00000411386 101 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 EEF1A1P40-201ENST00000412883 573 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 DPH3P2-201ENST00000422618 250 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS35Q96QK1 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS35Q96QK1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS35Q96QK1 AC096638.1-201ENST00000444678 216 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 AL136380.1-201ENST00000447970 162 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS35Q96QK1 AL353705.4-201ENST00000449661 238 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VPS35Q96QK1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS35Q96QK1 AC117503.1-201ENST00000472241 394 ntBASIC2.14□□□□□ -2.07
VPS35Q96QK1 RPS27P21-201ENST00000486977 252 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms