Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FARSBP1-201ENST00000435808 1778 ntBASIC1.16□□□□□ -2.22
CCDC42Q96M95 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.15□□□□□ -2.22
CCDC42Q96M95 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
CCDC42Q96M95 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC42Q96M95 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC42Q96M95 MIR618-201ENST00000385287 98 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC138623.1-201ENST00000418060 216 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 MTCYBP42-201ENST00000444653 1130 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC132942.1-201ENST00000486753 483 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AP000889.1-201ENST00000530968 660 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 RPS3AP4-201ENST00000555161 764 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC104072.1-201ENST00000568817 668 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC005668.1-201ENST00000571142 476 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 Z82243.1-201ENST00000609432 473 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 AC092140.2-201ENST00000618027 521 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.15□□□□□ -2.23
CCDC42Q96M95 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC42Q96M95 Y_RNA.408-201ENST00000383987 102 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 MTCO1P56-201ENST00000401674 224 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 USP9YP18-201ENST00000425912 695 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC005094.1-201ENST00000440420 368 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 RNU6-150P-201ENST00000516237 95 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 SNORA31.17-201ENST00000516953 127 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC021451.1-201ENST00000523498 1129 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 DEFB131D-201ENST00000526803 184 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC002400.1-201ENST00000569310 726 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 AP001981.2-201ENST00000603241 418 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC012360.2-201ENST00000609349 391 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC093788.1-201ENST00000609356 927 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 uc_338.15-201ENST00000615470 191 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 AC090517.3-201ENST00000625170 141 ntBASIC1.14□□□□□ -2.23
CCDC42Q96M95 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.14□□□□□ -2.23
CCDC42Q96M95 Y_RNA.99-201ENST00000363138 105 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 RNU6-529P-201ENST00000363383 104 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 RNU6-271P-201ENST00000363858 105 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 NCOR1P3-201ENST00000420479 303 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 USP9YP35-201ENST00000435696 412 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 OR2A41P-201ENST00000473586 105 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC010409.1-201ENST00000487382 476 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 RNU6-143P-201ENST00000516942 93 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC018630.3-201ENST00000542637 96 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL391813.2-201ENST00000609113 322 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL157834.3-201ENST00000615543 103 ntBASIC1.13□□□□□ -2.23
CCDC42Q96M95 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
CCDC42Q96M95 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC42Q96M95 SNORA62.1-201ENST00000364287 154 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 SNORA11.2-201ENST00000408318 127 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 AL592045.1-201ENST00000429867 352 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 RPS6P15-201ENST00000431996 751 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 GDI2P2-201ENST00000445131 608 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AL035666.1-201ENST00000446195 348 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 RNU7-59P-201ENST00000459101 61 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 RPL30P12-201ENST00000474666 353 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 RPL39P36-201ENST00000490784 156 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC42Q96M95 RN7SKP256-201ENST00000517201 314 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC087441.2-201ENST00000529141 262 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC019288.1-201ENST00000557918 224 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC009977.1-201ENST00000586015 570 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms